Evidence map›Paper›PMID 28349286›Full record

ArticleMarine biotechnology (New York, N.Y.)2017

Epipodial Tentacle Gene Expression and Predetermined Resilience to Summer Mortality in the Commercially Important Greenlip Abalone, Haliotis laevigata.

Brett P Shiel, Nathan E Hall, Ira R Cooke, Nicholas A Robinson, Jan M Strugnell

Open access · hybridAbstract read
In one paragraph

Article in Marine biotechnology (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 28 citations in OpenAlex.

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  7. Responses ofMolecules (Basel, Switzerland) · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Brett P ShielDepartment of Ecology, Environment and Evolution, School of Life Sciences, La Trobe University, Kingsbury Drive, Melbourne, VIC, 3086, Australia. bpshiel@students.latrobe.edu.au.
Nathan E HallDepartment of Ecology, Environment and Evolution, School of Life Sciences, La Trobe University, Kingsbury Drive, Melbourne, VIC, 3086, Australia.
Ira R CookeLife Sciences Computation Centre, VLSCI, Parkville, VIC, Australia.
Nicholas A RobinsonNofima, P.O. Box 210, 1431, Ås, Norway.
Jan M StrugnellDepartment of Ecology, Environment and Evolution, School of Life Sciences, La Trobe University, Kingsbury Drive, Melbourne, VIC, 3086, Australia.
La Trobe University · AUFafo Foundation · NOJames Cook University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

"Summer mortality" is a phenomenon that occurs during warm water temperature spikes that results in the mass mortality of many ecologically and economically important mollusks such as abalone. This study aimed to determine whether the baseline gene expression of abalone before a laboratory-induced summer mortality event was associated with resilience to summer mortality. Tentacle transcriptomes of 35 greenlip abalone (Haliotis laevigata) were sequenced prior to the animals being exposed to an increase in water temperature-simulating conditions which have previously resulted in summer mortality. Abalone derived from three source locations with different environmental conditions were categorized as susceptible or resistant to summer mortality depending on whether they died or survived after the water temperature was increased. We detected two genes showing significantly higher expression in resilient abalone relative to susceptible abalone prior to the laboratory-induced summer mortality event. One of these genes was annotated through the NCBI non-redundant protein database using BLASTX to an anemone (Exaiptasia pallida) Transposon Ty3-G Gag Pol polyprotein. Distinct gene expression signatures were also found between resilient and susceptible abalone depending on the population origin, which may suggest divergence in local adaptation mechanisms for resilience. Many of these genes have been suggested to be involved in antioxidant and immune-related functions. The identification of these genes and their functional roles have enhanced our understanding of processes that may contribute to summer mortality in abalone. Our study supports the hypothesis that prestress gene expression signatures are indicative of the likelihood of summer mortality.

Indexed as

Hot TemperatureAdaptation, BiologicalAnimalsAquacultureGastropodaGene ExpressionSouth AustraliaAbaloneAquacultureDifferential gene expressionHeat stressMolluskRNA-seqTranscriptomics

Identifiers

PMID28349286
PMCPMC5405107
OpenAlexW2599889853

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.