Evidence map›Paper›PMID 28348814›Full record

ArticleMicrobial genomics2015

Applying phylogenomics to understand the emergence of Shiga-toxin-producing

Timothy J Dallman, Philip M Ashton, Lisa Byrne, Neil T Perry, Liljana Petrovska, Richard Ellis, Lesley Allison, Mary Hanson, Anne Holmes, George J Gunn and 6 more

Abstract read
In one paragraph

Article in Microbial genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed.

  1. Whole-Genome Sequencing ofMicroorganisms · 2026
    Article
  2. Surveillance of enteropathogenicJournal of medical microbiology · 2026
    Article
  3. Mind the gap! TypingMicrobial genomics · 2026
    Article
  4. Article
  5. Article
  6. Predicting clinical outcome ofMicrobial genomics · 2025
    Article
  7. Shiga Toxin-ProducingMicroorganisms · 2025
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Prevalence of Shiga Toxin-ProducingAnimals : an open access journal from MDPI · 2023
    Article
  14. Article
  15. Analysis ofMicrobial genomics · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Timothy J DallmanPublic Health England, 61 Colindale Avenue, London NW9 5EQ, UK.
Philip M AshtonPublic Health England, 61 Colindale Avenue, London NW9 5EQ, UK.
Lisa ByrnePublic Health England, 61 Colindale Avenue, London NW9 5EQ, UK.
Neil T PerryPublic Health England, 61 Colindale Avenue, London NW9 5EQ, UK.
Liljana PetrovskaAnimal Laboratories and Plant Health Agency, Woodham Lane, Surrey KT15 3NB, UK.
Richard EllisAnimal Laboratories and Plant Health Agency, Woodham Lane, Surrey KT15 3NB, UK.
Lesley AllisonScottish E. coli O157/VTEC Reference Laboratory, Department of Laboratory Medicine, Royal Infirmary of Edinburgh, 51 Little France Crescent, Edinburgh EH16 4SA, UK.
Mary HansonScottish E. coli O157/VTEC Reference Laboratory, Department of Laboratory Medicine, Royal Infirmary of Edinburgh, 51 Little France Crescent, Edinburgh EH16 4SA, UK.
Anne HolmesScottish E. coli O157/VTEC Reference Laboratory, Department of Laboratory Medicine, Royal Infirmary of Edinburgh, 51 Little France Crescent, Edinburgh EH16 4SA, UK.
George J GunnFuture Farming Systems, R&D Division, SRUC, Drummondhill, Stratherrick Rd., Inverness IV2 4JZ, Scotland, UK.
Margo E Chase-ToppingCentre for Immunity, Infection and Evolution, Kings Buildings, University of Edinburgh, Edinburgh EH9 3FL, UK.
Mark E J WoolhouseCentre for Immunity, Infection and Evolution, Kings Buildings, University of Edinburgh, Edinburgh EH9 3FL, UK.
Kathie A GrantPublic Health England, 61 Colindale Avenue, London NW9 5EQ, UK.
David L GallyDivision of Infection and Immunity, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Roslin EH25 9RG, UK.
John WainUniversity of East Anglia, Norwich NR4 7TJ, UK.
Claire JenkinsPublic Health England, 61 Colindale Avenue, London NW9 5EQ, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shiga-toxin-producing

Indexed as

emerging infectionsEscherichia coligenomicsOne Healthpublic health microbiologyShiga toxin

Identifiers

PMID28348814
PMCPMC5320567

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.