Evidence map›Paper›PMID 28348411›Full record

ArticleNature communications2017

Global site-specific N-glycosylation analysis of HIV envelope glycoprotein.

Liwei Cao, Jolene K Diedrich, Daniel W Kulp, Matthias Pauthner, Lin He, Sung-Kyu Robin Park, Devin Sok, Ching Yao Su, Claire M Delahunty, Sergey Menis and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 153 papers.

0numbers the graph read from it
0cells of the map it votes in
153citing papers in PubMed
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

153 citing papers in PubMed, 225 citations in OpenAlex.

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  19. Conformational Variability of HIV-1 Env Trimer and Viral Vulnerability.bioRxiv : the preprint server for biology · 2025
    Article
  20. Review

93 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 1 institution in 1 country.

Liwei CaoDepartment of Cell and Molecular Biology, The Scripps Research Institute, La Jolla, California 92037, USA.
Jolene K DiedrichDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California 92037, USA.
Daniel W KulpDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California 92037, USA.
Matthias PauthnerDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California 92037, USA.ORCID 0000-0001-9212-4307
Lin HeDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California 92037, USA.
Sung-Kyu Robin ParkDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California 92037, USA.
Devin SokDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California 92037, USA.
Ching Yao SuDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California 92037, USA.
Claire M DelahuntyDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California 92037, USA.
Sergey MenisDepartment of the IAVI Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, California 92037, USA.
Raiees AndrabiDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California 92037, USA.
Javier GuenagaDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California 92037, USA.
Erik GeorgesonDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California 92037, USA.
Michael KubitzDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California 92037, USA.
Yumiko AdachiDepartment of the IAVI Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, California 92037, USA.
Dennis R BurtonDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California 92037, USA.
William R SchiefDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California 92037, USA.
John R YatesDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California 92037, USA.ORCID 0000-0001-5267-1672
James C PaulsonDepartment of Cell and Molecular Biology, The Scripps Research Institute, La Jolla, California 92037, USA.
Scripps Research Institute · US

Funding

Support Component D/Vaccine Discovery, Concept to ClinicUM1AI100663 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BAROUCH, DAN H. · 2012 to 2018
$131.5M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Glycan dependent epitopes of HIV broadly neutralizing antibodiesR01AI113867 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI PAULSON, JAMES C, SCHIEF, WILLIAM R. · 2014 to 2018
$4.8M
NIAID NIH HHS R01 AI113867NIAID NIH HHS UM1 AI100663NIGMS NIH HHS P41 GM103533
6 · The paper itself

Abstract

HIV-1 envelope glycoprotein (Env) is the sole target for broadly neutralizing antibodies (bnAbs) and the focus for design of an antibody-based HIV vaccine. The Env trimer is covered by ∼90N-linked glycans, which shield the underlying protein from immune surveillance. bNAbs to HIV develop during infection, with many showing dependence on glycans for binding to Env. The ability to routinely assess the glycan type at each glycosylation site may facilitate design of improved vaccine candidates. Here we present a general mass spectrometry-based proteomics strategy that uses specific endoglycosidases to introduce mass signatures that distinguish peptide glycosites that are unoccupied or occupied by high-mannose/hybrid or complex-type glycans. The method yields >95% sequence coverage for Env, provides semi-quantitative analysis of the glycosylation status at each glycosite. We find that most glycosites in recombinant Env trimers are fully occupied by glycans, varying in the proportion of high-mannose/hybrid and complex-type glycans.

Indexed as

EpitopesGlycosylationHIV-1HIV Envelope Protein gp120Mass SpectrometryModels, MolecularPeptidesPolysaccharidesProtein MultimerizationReproducibility of ResultsEpitopesHIV Envelope Protein gp120PeptidesPolysaccharides

Identifiers

PMID28348411
PMCPMC5379070
OpenAlexW2597413779

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.