Evidence map›Paper›PMID 28348249›Full record

ReviewPhilosophical transactions of the Royal Society of London. Series B, Biological sciences2017

Deciphering tissue morphodynamics using bioimage informatics.

Alexandre C Dufour, Anneliene H Jonker, Jean-Christophe Olivo-Marin

Abstract readReview
In one paragraph

Review in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Engineering Heterogeneous Tumor Models for Biomedical Applications.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Review
  2. Article
  3. Journal of fungi (Basel, Switzerland) · 2021
    Article
  4. Frontiers in Intravital Multiphoton Microscopy of Cancer.Cancer reports (Hoboken, N.J.) · 2020
    Review
  5. Article
  6. Article
  7. Taking the strain: quantifying the contributions of all cell behaviours to changes in epithelial shape.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  8. Systems morphodynamics: understanding the development of tissue hardware.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Alexandre C DufourInstitut Pasteur, Bioimage Analysis Unit, 25-28 rue du Docteur Roux, Paris, France adufour@pasteur.fr.ORCID http://orcid.org/0000-0002-9417-7389
Anneliene H JonkerINSERM US14, 96 rue Didot, Paris, France.ORCID http://orcid.org/0000-0001-5883-7610
Jean-Christophe Olivo-MarinInstitut Pasteur, Bioimage Analysis Unit, 25-28 rue du Docteur Roux, Paris, France jcolivo@pasteur.fr.ORCID http://orcid.org/0000-0001-6796-0696

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent years developmental biology has greatly benefited from the latest advances in fluorescence microscopy techniques. Consequently, quantitative and automated analysis of this data is becoming a vital first step in the quest for novel insights into the various aspects of development. Here we present an introductory overview of the various image analysis methods proposed for developmental biology images, with particular attention to openly available software packages. These tools, as well as others to come, are rapidly paving the way towards standardized and reproducible bioimaging studies at the whole-tissue level. Reflecting on these achievements, we discuss the remaining challenges and the future endeavours lying ahead in the post-image analysis era.This article is part of the themed issue 'Systems morphodynamics: understanding the development of tissue hardware'.

Indexed as

MorphogenesisPlant DevelopmentDevelopmental BiologyImage Processing, Computer-AssistedMicroscopy, FluorescenceSoftwarebioimage informaticscell segmentationcell trackingreproducible researchsoftware

Identifiers

PMID28348249
PMCPMC5379021

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.