Evidence map›Paper›PMID 28346784›Full record

ArticleBiochemistry2017

Structure Determination of Mycobacterium tuberculosis Serine Protease Hip1 (Rv2224c).

Jacqueline L Naffin-Olivos, Andrew Daab, Andre White, Nathan E Goldfarb, Amy C Milne, Dali Liu, Jacqueline Baikovitz, Ben M Dunn, Jyothi Rengarajan, Gregory A Petsko and 1 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Molecules (Basel, Switzerland) · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Jacqueline L Naffin-OlivosRosenstiel Basic Medical Sciences Research Center, Brandeis University , Waltham, Massachusetts 02454, United States.ORCID 0000-0002-3356-2419
Andrew DaabRosenstiel Basic Medical Sciences Research Center, Brandeis University , Waltham, Massachusetts 02454, United States.
Andre WhiteRosenstiel Basic Medical Sciences Research Center, Brandeis University , Waltham, Massachusetts 02454, United States.
Nathan E GoldfarbDepartment of Pharmaceutical and Biomedical Sciences, California Health Sciences University , Clovis, California 93612, United States.
Amy C MilneRosenstiel Basic Medical Sciences Research Center, Brandeis University , Waltham, Massachusetts 02454, United States.
Dali LiuDepartment of Chemistry and Biochemistry, Loyola University Chicago , Chicago, Illinois 60660, United States.
Jacqueline BaikovitzDepartment of Biology, Brandeis University , Waltham, Massachusetts 02454, United States.
Ben M DunnDepartment of Biochemistry and Molecular Biology, University of Florida , Gainesville, Florida 32610, United States.
Jyothi RengarajanDivision of Infectious Diseases, Department of Medicine, Emory Vaccine Center, Emory University School of Medicine , Atlanta, Georgia 30329, United States.
Gregory A PetskoAppel Alzheimer's Disease Research Institute, Weill Cornell Medical College , New York, New York 10021, United States.
Dagmar RingeRosenstiel Basic Medical Sciences Research Center, Brandeis University , Waltham, Massachusetts 02454, United States.
Brandeis University · USCornell University · USEmory University · USLoyola University Chicago · USUniversity of Florida · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Human Immunodeficiency Virus ProteinaseR37AI028571 · NIAID · UNIVERSITY OF FLORIDA · PI DUNN, BEN M. · 2005 to 2014
$3.8M
SITE-SPECIFIC MUTAGENESIS OF TRIOSE PHOSPHATE ISOMERASER01GM032415 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI PETSKO, GREGORY A · 1985 to 2006
$2.2M
Modulation of Host Responses by Mycobacterium TuberculosisR01AI083366 · NIAID · EMORY UNIVERSITY · PI RENGARAJAN, JYOTHI · 2010 to 2014
$2.2M
Mechanisms of Enzymic and Hydride TransfersR37GM032415 · NIGMS · BRANDEIS UNIVERSITY · PI PETSKO, GREGORY A · 2008 to 2012
$1.9M
Role of Mycobacterium tuberculosis protease in pathogenesis and host responseR00TW008043 · FIC · EMORY UNIVERSITY · PI RENGARAJAN, JYOTHI · 2008 to 2010
$675k
Targeting an immunomodulatory protease for adjunctive tuberculosis chemotherapyR21AI117162 · NIAID · EMORY UNIVERSITY · PI RENGARAJAN, JYOTHI · 2015 to 2016
$507k
FIC NIH HHS R00 TW008043NIAID NIH HHS R01 AI083366NIAID NIH HHS R21 AI117162NIAID NIH HHS R37 AI028571NIBIB NIH HHS P30 EB009998NIGMS NIH HHS R01 GM032415NIGMS NIH HHS R37 GM032415NIH HHS P51 OD011132
6 · The paper itself

Abstract

The Mycobacterium tuberculosis (Mtb) serine protease Hip1 (hydrolase important for pathogenesis; Rv2224c) promotes tuberculosis (TB) pathogenesis by impairing host immune responses through proteolysis of a protein substrate, Mtb GroEL2. The cell surface localization of Hip1 and its immunomodulatory functions make Hip1 a good drug target for new adjunctive immune therapies for TB. Here, we report the crystal structure of Hip1 to a resolution of 2.6 Å and the kinetic studies of the enzyme against model substrates and the protein GroEL2. The structure shows a two-domain protein, one of which contains the catalytic residues that are the signature of a serine protease. Surprisingly, a threonine is located within the active site close enough to hydrogen bond with the catalytic residues Asp463 and His490. Mutation of this residue, Thr466, to alanine established its importance for function. Our studies provide insights into the structure of a member of a novel family of proteases. Knowledge of the Hip1 structure will aid in designing inhibitors that could block Hip1 activity.

Indexed as

Models, MolecularAmino Acid SubstitutionBacterial ProteinsBiocatalysisCatalytic DomainCircular DichroismCrystallography, X-RayEnzyme StabilityMethionineMutagenesis, Site-DirectedMutationMycobacterium tuberculosisPeptide FragmentsProtein ConformationProteolysisRecombinant Fusion ProteinsBacterial ProteinsHip1 protein, Mycobacterium tuberculosisMethioninePeptide FragmentsRecombinant Fusion ProteinsRecombinant ProteinsSelenomethionineSerine Proteases

Identifiers

PMID28346784
PMCPMC6033327
OpenAlexW2603661099

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.