Evidence map›Paper›PMID 28346484›Full record

ArticlePloS one2017

A Neighborhood-Wide Association Study (NWAS): Example of prostate cancer aggressiveness.

Shannon M Lynch, Nandita Mitra, Michelle Ross, Craig Newcomb, Karl Dailey, Tara Jackson, Charnita M Zeigler-Johnson, Harold Riethman, Charles C Branas, Timothy R Rebbeck

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Neighborhood Disadvantage and Prostate Tumor Aggressiveness among African American and European American Men.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. The Hallmarks of Precancer.Cancer discovery · 2024
    Article
  13. Review
  14. Article
  15. Article
  16. Methodological Challenges in Spatial and Contextual Exposome-Health Studies.Critical reviews in environmental science and technology · 2023
    Article
  17. Article
  18. Article
  19. Contributions of Social Factors to Disparities in Prostate Cancer Risk Profiles among Black Men and Non-Hispanic White Men with Prostate Cancer in California.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Shannon M LynchFox Chase Cancer Center, Cancer Prevention and Control, Philadelphia, Pennsylvania, United States of America.
Nandita MitraUniversity of Pennsylvania, Perelman School of Medicine, Philadelphia, Pennsylvania, United States of America.
Michelle RossUniversity of Pennsylvania, Perelman School of Medicine, Philadelphia, Pennsylvania, United States of America.
Craig NewcombUniversity of Pennsylvania, Perelman School of Medicine, Philadelphia, Pennsylvania, United States of America.
Karl DaileyUniversity of Pennsylvania, Perelman School of Medicine, Philadelphia, Pennsylvania, United States of America.
Tara JacksonUniversity of Pennsylvania, Perelman School of Medicine, Philadelphia, Pennsylvania, United States of America.
Charnita M Zeigler-JohnsonThomas Jefferson University, Philadelphia, Pennsylvania, United States of America.
Harold RiethmanOld Dominion University, Norfolk, Virginia, United States of America.
Charles C BranasUniversity of Pennsylvania, Perelman School of Medicine, Philadelphia, Pennsylvania, United States of America.
Timothy R RebbeckDana Farber Cancer Institute and Harvard TH Chan School of Public Health, Boston, Massachusetts, United States of America.

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Dietmar J Kappes · 1985 to 2026
$138.8M
Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
NCI NIH HHS P30 CA006927NCI NIH HHS P30 CA010815
6 · The paper itself

Abstract

purposeCancer results from complex interactions of multiple variables at the biologic, individual, and social levels. Compared to other levels, social effects that occur geospatially in neighborhoods are not as well-studied, and empiric methods to assess these effects are limited. We propose a novel Neighborhood-Wide Association Study(NWAS), analogous to genome-wide association studies(GWAS), that utilizes high-dimensional computing approaches from biology to comprehensively and empirically identify neighborhood factors associated with disease.

methodsPennsylvania Cancer Registry data were linked to U.S. Census data. In a successively more stringent multiphase approach, we evaluated the association between neighborhood (n = 14,663 census variables) and prostate cancer aggressiveness(PCA) with n = 6,416 aggressive (Stage≥3/Gleason grade≥7 cases) vs. n = 70,670 non-aggressive (Stage<3/Gleason grade<7) cases in White men. Analyses accounted for age, year of diagnosis, spatial correlation, and multiple-testing. We used generalized estimating equations in Phase 1 and Bayesian mixed effects models in Phase 2 to calculate odds ratios(OR) and confidence/credible intervals(CI). In Phase 3, principal components analysis grouped correlated variables.

resultsWe identified 17 new neighborhood variables associated with PCA. These variables represented income, housing, employment, immigration, access to care, and social support. The top hits or most significant variables related to transportation (OR = 1.05;CI = 1.001-1.09) and poverty (OR = 1.07;CI = 1.01-1.12).

conclusionsThis study introduces the application of high-dimensional, computational methods to large-scale, publically-available geospatial data. Although NWAS requires further testing, it is hypothesis-generating and addresses gaps in geospatial analysis related to empiric assessment. Further, NWAS could have broad implications for many diseases and future precision medicine studies focused on multilevel risk factors of disease.

Indexed as

Health Services AccessibilityIncomeResidence CharacteristicsSocial SupportAgedHumansMaleMiddle AgedNeoplasm GradingNeoplasm InvasivenessPovertyProstatic NeoplasmsRisk FactorsSeverity of Illness Index

Identifiers

PMID28346484
PMCPMC5367705

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.