Evidence map›Paper›PMID 28346139›Full record

ArticleeLife2017

Oncometabolite D-2-Hydroxyglutarate enhances gene silencing through inhibition of specific H3K36 histone demethylases.

Ryan Janke, Anthony T Iavarone, Jasper Rine

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 40 citations in OpenAlex.

  1. Metabolism of myeloid cells in brain tumors.Frontiers in immunology · 2026
    Review
  2. Article
  3. Review
  4. The DNA methylation landscape of musculoskeletal sarcomas.Exploration of targeted anti-tumor therapy · 2025
    Review
  5. Review
  6. Article
  7. Review
  8. Metabolic Reprogramming and Potential Therapeutic Targets in Lymphoma.International journal of molecular sciences · 2023
    Review
  9. Review
  10. Article
  11. Article
  12. Quantitative Analysis of Oncometabolite 2-Hydroxyglutarate.Advances in experimental medicine and biology · 2021
    Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Ten principles of heterochromatin formation and function.Nature reviews. Molecular cell biology · 2018
    Review
  20. Pivotal roles of PCNA loading and unloading in heterochromatin function.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ryan JankeDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0002-5755-8019
Anthony T IavaroneCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, United States.
Jasper RineDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID 0000-0003-2297-9814
QB3 · US

Funding

GENETIC ANALYSIS OF THE GENES CONTROLLING A POSITIONR01GM031105 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 1985 to 2020
$6.4M
GENETIC ANALYSIS OF GENES CONTROLLING A POSITION EFFECTR37GM031105 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 1999 to 2008
$3.5M
Metabolism and EpigeneticsR01GM120374 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 2016 to 2019
$2.3M
High Definition Ion Mobility SpectrometerS10OD020062 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI WILLIAMS, EVAN R · 2015 to 2015
$590k
Metabolic Impact on Epigenetic ProcessesF32GM115074 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI JANKE, RYAN H. · 2016 to 2017
$115k
NIGMS NIH HHS F32 GM115074NIGMS NIH HHS R01 GM031105NIGMS NIH HHS R01 GM120374NIGMS NIH HHS R37 GM031105NIH HHS S10 OD020062
6 · The paper itself

Abstract

Certain mutations affecting central metabolism cause accumulation of the oncometabolite D-2-hydroxyglutarate which promotes progression of certain tumors. High levels of D-2-hydroxyglutarate inhibit the TET family of DNA demethylases and Jumonji family of histone demethylases and cause epigenetic changes that lead to altered gene expression. The link between inhibition of DNA demethylation and changes in expression is strong in some cancers, but not in others. To determine whether D-2-hydroxyglutarate can affect gene expression through inhibiting histone demethylases, orthologous mutations to those known to cause accumulation of D-2-hydroxyglutarate in tumors were generated in

Indexed as

Gene SilencingGlutaratesHistone DemethylasesHistonesProtein Processing, Post-TranslationalSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteinsalpha-hydroxyglutarateGlutaratesHistone DemethylasesHistonesSaccharomyces cerevisiae ProteinschromosomesD-2-HydroxyglutarategenesHeterochromatinIsocitrate DehydrogenaseOncometaboliteS. cerevisiae

Identifiers

PMID28346139
PMCPMC5388528
OpenAlexW2600646132

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.