Evidence map›Paper›PMID 28345654›Full record

ArticleNature communications2017

The soybean GmSNAP18 gene underlies two types of resistance to soybean cyst nematode.

Shiming Liu, Pramod K Kandoth, Naoufal Lakhssassi, Jingwen Kang, Vincent Colantonio, Robert Heinz, Greg Yeckel, Zhou Zhou, Sadia Bekal, Johannes Dapprich and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Identification of candidate genes associated with resistance to Heterodera sojae in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  7. Review
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  9. Article
  10. Gene Localization and Functional Validation ofPlants (Basel, Switzerland) · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Allele-tagged TaqManMolecular biology reports · 2024
    Article
  18. Review
  19. Article
  20. Copy number variations at theFrontiers in plant science · 2024
    Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Shiming LiuDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, 1205 Lincoln Drive RM176, Carbondale, Illinois 62901, USA.
Pramod K KandothDivision of Plant Sciences and Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, USA.
Naoufal LakhssassiDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, 1205 Lincoln Drive RM176, Carbondale, Illinois 62901, USA.
Jingwen KangDivision of Plant Sciences and Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, USA.
Vincent ColantonioDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, 1205 Lincoln Drive RM176, Carbondale, Illinois 62901, USA.
Robert HeinzDivision of Plant Sciences and Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, USA.
Greg YeckelDivision of Plant Sciences and Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, USA.
Zhou ZhouDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, 1205 Lincoln Drive RM176, Carbondale, Illinois 62901, USA.
Sadia BekalDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, 1205 Lincoln Drive RM176, Carbondale, Illinois 62901, USA.
Johannes DapprichGeneration Biotech, Lawrenceville, New Jersey 08648, USA.
Bjorn RotterGenXPro-GmbH, Altenhöferallee 3, 60438 Frankfurt am Main, Germany.
Silvia CianzioDepartment of Agronomy, Iowa State University, Ames, Iowa 50011, USA.
Melissa G MitchumDivision of Plant Sciences and Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, USA.
Khalid MeksemDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, 1205 Lincoln Drive RM176, Carbondale, Illinois 62901, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two types of resistant soybean (Glycine max (L.) Merr.) sources are widely used against soybean cyst nematode (SCN, Heterodera glycines Ichinohe). These include Peking-type soybean, whose resistance requires both the rhg1-a and Rhg4 alleles, and PI 88788-type soybean, whose resistance requires only the rhg1-b allele. Multiple copy number of PI 88788-type GmSNAP18, GmAAT, and GmWI12 in one genomic segment simultaneously contribute to rhg1-b resistance. Using an integrated set of genetic and genomic approaches, we demonstrate that the rhg1-a Peking-type GmSNAP18 is sufficient for resistance to SCN in combination with Rhg4. The two SNAPs (soluble NSF attachment proteins) differ by only five amino acids. Our findings suggest that Peking-type GmSNAP18 is performing a different role in SCN resistance than PI 88788-type GmSNAP18. As such, this is an example of a pathogen resistance gene that has evolved to underlie two types of resistance, yet ensure the same function within a single plant species.

Indexed as

Genes, PlantAllelesAnimalsCloning, MolecularDisease ResistanceDNA, PlantGenetic Complementation TestGlycine maxHaplotypesHigh-Throughput Nucleotide SequencingHost-Parasite InteractionsINDEL MutationModels, GeneticNematodaPolymorphism, Single NucleotideSoybean ProteinsDNA, PlantSoybean Proteins

Identifiers

PMID28345654
PMCPMC5378975

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.