Evidence map›Paper›PMID 28345292›Full record

ArticleTransboundary and emerging diseases2018

The detection and phylogenetic analysis of porcine deltacoronavirus from Guangdong Province in Southern China.

K Mai, J Feng, G Chen, D Li, L Zhou, Y Bai, Q Wu, J Ma

Open access · bronzeAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Transboundary and emerging diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Expressions of IL4, IL10, and IFNγ cytokines genes during bacterial mastitis.Journal of advanced veterinary and animal research · 2022
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

K MaiCollege of Animal Science, South China Agricultural University, Guangzhou, China.
J FengCollege of Animal Science, South China Agricultural University, Guangzhou, China.
G ChenCollege of Animal Science, South China Agricultural University, Guangzhou, China.
D LiCollege of Animal Science, South China Agricultural University, Guangzhou, China.
L ZhouCollege of Animal Science, South China Agricultural University, Guangzhou, China.
Y BaiCollege of Animal Science, South China Agricultural University, Guangzhou, China.
Q WuCollege of Animal Science, South China Agricultural University, Guangzhou, China.
J MaCollege of Animal Science, South China Agricultural University, Guangzhou, China.ORCID http://orcid.org/0000-0001-6285-312X
South China Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine deltacoronavirus (PDCoV) is a newly discovered coronavirus that causes diarrhoea, vomiting and dehydration in sucking and nursing piglets. It was first reported in Hong Kong in 2012 and has since been discovered in the United States, Canada, South Korea, mainland China, Thailand and Laos. PDCoV has been experimentally proved to lead to diarrhoea in swine and it was detected positive in pigs in Guangdong, southern China. In our study, 252 faecal and intestinal samples from sucking piglets and sows with diarrhoea were surveyed for common enteric viruses. We found a prevalence of PDCoV (21.8%), porcine epidemic diarrhoea virus (65.5%), transmissible gastroenteritis virus (0%), rotavirus group A (25.0%) and porcine kobuvirus (68.7%). We isolated 13 PDCoV strains and discovered that PDCoV infections were often co-infections with kobuvirus rather than the commonly linked porcine epidemic diarrhoea virus. Phylogenetic analysis of S gene and N gene revealed that 11 of 13 PDCoV strains belonged to Chinese lineage. As for the left two strains, one single strain (CHN-GD16-05) belonged to American and Korean lineages while another strain (CHN-GD16-03) was similar to a Thai strain, but only in the S gene. This suggested a possible recombination event between the Thai and the newly described Chinese strain.

Indexed as

AnimalsChinaCoronavirus InfectionsDiarrheaFecesFemaleGenes, ViralIntestinesPhylogenyPorcine epidemic diarrhea virusPrevalenceSwineSwine Diseasesnucleocapsid genephylogenetic analysisPorcine deltacoronavirusprevalenceSouthern Chinaspike gene

Identifiers

PMID28345292
PMCPMC7169752
OpenAlexW2601583866

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.