Evidence map›Paper›PMID 28344576›Full record

ArticleFrontiers in microbiology2017

Genomic Characterization of Recent Chicken Anemia Virus Isolates in China.

Yang Li, Lichun Fang, Shuai Cui, Jiayuan Fu, Xiaohan Li, Huanmin Zhang, Zhizhong Cui, Shuang Chang, Weifeng Shi, Peng Zhao

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
  2. Article
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  9. Article
  10. Subclinical circulation of Chicken infectious anaemia virus- A Sero-molecular study.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  11. Article
  12. Article
  13. Gyrovirus: current status and challenge.Frontiers in microbiology · 2024
    Review
  14. Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Yang LiCollege of Veterinary Medicine, Shandong Agricultural University Tai'an, China.
Lichun FangCollege of Veterinary Medicine, Shandong Agricultural University Tai'an, China.
Shuai CuiCollege of Veterinary Medicine, Shandong Agricultural University Tai'an, China.
Jiayuan FuCollege of Veterinary Medicine, Shandong Agricultural University Tai'an, China.
Xiaohan LiCollege of Veterinary Medicine, Shandong Agricultural University Tai'an, China.
Huanmin ZhangAvian Disease and Oncology Laboratory, Agricultural Research Service, United States Department of Agriculture East Lansing, MI, USA.
Zhizhong CuiCollege of Veterinary Medicine, Shandong Agricultural University Tai'an, China.
Shuang ChangCollege of Veterinary Medicine, Shandong Agricultural University Tai'an, China.
Weifeng ShiInstitute of Pathogen Biology, Taishan Medical College Tai'an, China.
Peng ZhaoCollege of Veterinary Medicine, Shandong Agricultural University Tai'an, China.
Shandong Agricultural University · CNTaishan Medical University · CNUnited States Department of Agriculture · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chicken anemia virus (CAV) causes diseases in young chickens, which include increased pathogenicity of secondary infectious agents, generalized lymphoid depletion, and immunodepression. In the present study, we have identified 22 CAV strains isolated from several commercial chicken farms in Northern China during 2014-2015. In addition, two CAVs were also isolated from stray mouse and dog feces, respectively. To our knowledge, this is the first report of identification of CAV from mouse and dog feces. Phylogenetic analysis of 121 full-length CAV genome sequences showed that all available CAV could be classified into eight lineages, supported by phylogenetic trees estimated using different methods. Furthermore, the 24 novel CAV sequences scattered across different branches, lack of clear spatio-temporal distribution characterization. Analysis of the 450 amino acids of VP1 protein identified 33 amino acid substitutions that were specific for CAVs from northern China. Putative gene recombination events were also detected in the genomes of newly isolated CAVs. In particular, a putative recombinant event was detected in the CAV-Dog genome with high statistical support. In summary, we established a robust classification system for CAV, revealed additional genomic diversity of CAV, and therefore, warranted additional efforts to explore CAV genomics and epidemiology.

Indexed as

chicken anemia virus (CAV)genetic analysismammalianphylogenetic analysisrecombination

Identifiers

PMID28344576
PMCPMC5344997
OpenAlexW2593093684

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.