Evidence map›Paper›PMID 28341852›Full record

ArticleScientific reports2017

Profiling of long non-coding RNAs identifies LINC00958 and LINC01296 as candidate oncogenes in bladder cancer.

Anna Katharina Seitz, Lise Lotte Christensen, Emil Christensen, Kasper Faarkrog, Marie Stampe Ostenfeld, Jakob Hedegaard, Iver Nordentoft, Morten Muhlig Nielsen, Johan Palmfeldt, Michelle Thomson and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 3 pooled it
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 3 syntheses or guidelines pooled it, 122 citations in OpenAlex.

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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 2 countries.

Anna Katharina SeitzDepartment of Molecular Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Lise Lotte ChristensenDepartment of Molecular Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Emil ChristensenDepartment of Molecular Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Kasper FaarkrogDepartment of Molecular Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Marie Stampe OstenfeldDepartment of Molecular Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Jakob HedegaardDepartment of Molecular Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Iver NordentoftDepartment of Molecular Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Morten Muhlig NielsenDepartment of Molecular Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Johan PalmfeldtResearch unit for Molecular Medicine, Department of Clinical Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Michelle ThomsonResearch unit for Molecular Medicine, Department of Clinical Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Michael Theis Solgaard JensenDepartment of Molecular Biology and Genetics - Genome expression, stability and technology, University of Aarhus, Aarhus, Denmark.
Roman NawrothDepartment of Urology, Klinikum rechts der Isar, Technical University Munich, Munich, Germany.
Tobias MaurerDepartment of Urology, Klinikum rechts der Isar, Technical University Munich, Munich, Germany.
Torben Falck ØrntoftDepartment of Molecular Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Jørgen Bjerggaard JensenDepartment of Urology, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark.
Christian Kroun DamgaardDepartment of Molecular Biology and Genetics - Genome expression, stability and technology, University of Aarhus, Aarhus, Denmark.
Lars DyrskjøtDepartment of Molecular Medicine, Aarhus University Hospital, University of Aarhus, Aarhus, Denmark. lars@clin.au.dk.
Aarhus University Hospital · DKAarhus University · DKKlinikum rechts der Isar · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aberrant expression of long non-coding RNAs (lncRNAs) has been regarded as a critical component in bladder cancer (BC) and lncRNAs have been associated with BC development and progression although their overall expression and functional significance is still unclear. The aim of our study was to identify novel lncRNAs with a functional role in BC carcinogenesis. RNA-sequencing was used to identify aberrantly expressed lncRNAs in 8 normal and 72 BC samples. We identified 89 lncRNAs that were significantly dys-regulated in BC. Five lncRNAs; LINC00958, LINC01296, LINC00355, LNC-CMC1-1 and LNC-ALX1-2 were selected for further analyses. Silencing of LINC00958 or LINC01296 in vitro reduced both cell viability and migration. Knock-down of LINC00958 also affected invasion and resistance to anoikis. These cellular effects could be linked to direct/indirect regulation of protein coding mRNAs involved in cell death/survival, proliferation and cellular movement. Finally, we showed that LINC00958 binds proteins involved in regulation and initiation of translation and in post-transcriptional modification of RNA, including Metadherin, which has previously been associated with BC. Our analyses identified novel lncRNAs in BC that likely act as oncogenic drivers contributing to an aggressive cancerous phenotype likely through interaction with proteins involved in initiation of translation and/or post-transcriptional modification of RNA.

Indexed as

Gene Expression Regulation, NeoplasticOncogenesCell Line, TumorCell SurvivalGene Expression ProfilingHumansRNA, Long NoncodingTranscriptomeUp-RegulationUrinary Bladder NeoplasmsRNA, Long Noncoding

Identifiers

PMID28341852
PMCPMC5428251
OpenAlexW2603736483

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.