Evidence map›Paper›PMID 28338931›Full record

ArticleGenome biology and evolution2017

Evolutionary Dynamics of Pathoadaptation Revealed by Three Independent Acquisitions of the VirB/D4 Type IV Secretion System in Bartonella.

Alexander Harms, Francisca H I D Segers, Maxime Quebatte, Claudia Mistl, Pablo Manfredi, Jonas Körner, Bruno B Chomel, Michael Kosoy, Soichi Maruyama, Philipp Engel and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 53 citations in OpenAlex.

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  7. Identification of theProceedings of the National Academy of Sciences of the United States of America · 2022
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  9. Frontiers in microbiology · 2022
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  10. Article
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  13. Bats are key hosts in the radiation of mammal-associated Bartonella bacteria.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Article
  14. Structural basis for selective AMPylation of Rac-subfamily GTPases byProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Article
  16. Article
  17. The Impact ofFrontiers in microbiology · 2021
    Review
  18. Article
  19. Gene Transfer Agents in Symbiotic Microbes.Results and problems in cell differentiation · 2020
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Alexander HarmsFocal Area Infection Biology, Biozentrum, University of Basel, Switzerland.
Francisca H I D SegersDepartment of Fundamental Microbiology, University of Lausanne, Switzerland.
Maxime QuebatteFocal Area Infection Biology, Biozentrum, University of Basel, Switzerland.
Claudia MistlFocal Area Infection Biology, Biozentrum, University of Basel, Switzerland.
Pablo ManfrediFocal Area Infection Biology, Biozentrum, University of Basel, Switzerland.
Jonas KörnerFocal Area Infection Biology, Biozentrum, University of Basel, Switzerland.
Bruno B ChomelDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California Davis.
Michael KosoyBacterial Diseases Branch, Division of Vector-Borne Disease, Centers for Disease Control and Prevention, Fort Collins, Colorado.
Soichi MaruyamaLaboratory of Veterinary Public Health, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, Tokyo, Japan.
Philipp EngelDepartment of Fundamental Microbiology, University of Lausanne, Switzerland.
Christoph DehioFocal Area Infection Biology, Biozentrum, University of Basel, Switzerland.
University of Basel · CHUniversity of Lausanne · CHCenters for Disease Control and Prevention · USNihon University · JPUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The α-proteobacterial genus Bartonella comprises a group of ubiquitous mammalian pathogens that are studied as a model for the evolution of bacterial pathogenesis. Vast abundance of two particular phylogenetic lineages of Bartonella had been linked to enhanced host adaptability enabled by lineage-specific acquisition of a VirB/D4 type IV secretion system (T4SS) and parallel evolution of complex effector repertoires. However, the limited availability of genome sequences from one of those lineages as well as other, remote branches of Bartonella has so far hampered comprehensive understanding of how the VirB/D4 T4SS and its effectors called Beps have shaped Bartonella evolution. Here, we report the discovery of a third repertoire of Beps associated with the VirB/D4 T4SS of B. ancashensis, a novel human pathogen that lacks any signs of host adaptability and is only distantly related to the two species-rich lineages encoding a VirB/D4 T4SS. Furthermore, sequencing of ten new Bartonella isolates from under-sampled lineages enabled combined in silico analyses and wet lab experiments that suggest several parallel layers of functional diversification during evolution of the three Bep repertoires from a single ancestral effector. Our analyses show that the Beps of B. ancashensis share many features with the two other repertoires, but may represent a more ancestral state that has not yet unleashed the adaptive potential of such an effector set. We anticipate that the effectors of B. ancashensis will enable future studies to dissect the evolutionary history of Bartonella effectors and help unraveling the evolutionary forces underlying bacterial host adaptation.

Indexed as

Bacterial ProteinsBacterial Secretion SystemsBartonellaBartonella InfectionsEvolution, MolecularHost-Pathogen InteractionsHumansPhylogenyType IV Secretion SystemsVirulence FactorsBacterial ProteinsBacterial Secretion SystemsType IV Secretion SystemsVirulence FactorsAMPylationbacterial effectorfilamentation induced by cAMPparallel evolution

Identifiers

PMID28338931
PMCPMC5381568
OpenAlexW2592841058

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.