Evidence map›Paper›PMID 28338077›Full record

ArticleScientific reports2017

Characterization of the Soluble NSF Attachment Protein gene family identifies two members involved in additive resistance to a plant pathogen.

Naoufal Lakhssassi, Shiming Liu, Sadia Bekal, Zhou Zhou, Vincent Colantonio, Kris Lambert, Abdelali Barakat, Khalid Meksem

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

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  17. Deciphering the genetic basis of resistance to soybean cyst nematode combining IBD and association mapping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  18. Article
  19. Breeding for disease resistance in soybean: a global perspective.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Naoufal LakhssassiDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL 62901, USA.
Shiming LiuDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL 62901, USA.
Sadia BekalDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL 62901, USA.
Zhou ZhouDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL 62901, USA.
Vincent ColantonioDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL 62901, USA.
Kris LambertDepartment of Crop Sciences, University of Illinois, Urbana, IL 61801, USA.
Abdelali BarakatDepartment of Biology, University of South Dakota, Vermillion, SD 57069, USA.
Khalid MeksemDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL 62901, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteins with Tetratricopeptide-repeat (TPR) domains are encoded by large gene families and distributed in all plant lineages. In this study, the Soluble NSF-Attachment Protein (SNAP) subfamily of TPR containing proteins is characterized. In soybean, five members constitute the SNAP gene family: GmSNAP18, GmSNAP11, GmSNAP14, GmSNAP02, and GmSNAP09. Recently, GmSNAP18 has been reported to mediate resistance to soybean cyst nematode (SCN). Using a population of recombinant inbred lines from resistant and susceptible parents, the divergence of the SNAP gene family is analysed over time. Phylogenetic analysis of SNAP genes from 22 diverse plant species showed that SNAPs were distributed in six monophyletic clades corresponding to the major plant lineages. Conservation of the four TPR motifs in all species, including ancestral lineages, supports the hypothesis that SNAPs were duplicated and derived from a common ancestor and unique gene still present in chlorophytic algae. Syntenic analysis of regions harbouring GmSNAP genes in soybean reveals that this family expanded from segmental and tandem duplications following a tetraploidization event. qRT-PCR analysis of GmSNAPs indicates a co-regulation following SCN infection. Finally, genetic analysis demonstrates that GmSNAP11 contributes to an additive resistance to SCN. Thus, GmSNAP11 is identified as a novel minor gene conferring resistance to SCN.

Indexed as

AnimalsGlycine maxNematodaPlant ImmunityPlant ProteinsSoluble N-Ethylmaleimide-Sensitive Factor Attachment ProteinsTetratricopeptide RepeatPlant ProteinsSoluble N-Ethylmaleimide-Sensitive Factor Attachment Proteins

Identifiers

PMID28338077
PMCPMC5364553

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.