Evidence map›Paper›PMID 28336967›Full record

ArticleScientific reports2017

The gene expression profiles in response to 102 traditional Chinese medicine (TCM) components: a general template for research on TCMs.

Chao Lv, Xueting Wu, Xia Wang, Juan Su, Huawu Zeng, Jing Zhao, Shan Lin, Runhui Liu, Honglin Li, Xuan Li and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 101 citations in OpenAlex.

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  5. A universal gene expression signature-based strategy for the high-throughput discovery of anti-inflammatory drugs.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2025
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  6. Cancer pharmacoinformatics: Databases and analytical tools.Functional & integrative genomics · 2024
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  12. High-throughput transcriptional profiling of perturbations byJournal of pharmaceutical analysis · 2023
    Article
  13. Article
  14. Frontiers in pharmacology · 2023
    Article
  15. Review
  16. Article
  17. Article
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  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Chao LvSchool of Pharmacy, Second Military Medical University, Shanghai, 200433, P.R. China.
Xueting WuKey Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200032, P.R. China.
Xia WangState Key Laboratory of Bioreactor Engineering, Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science and Technology, Shanghai, 200237, P.R. China.
Juan SuSchool of Pharmacy, Second Military Medical University, Shanghai, 200433, P.R. China.
Huawu ZengSchool of Pharmacy, Second Military Medical University, Shanghai, 200433, P.R. China.
Jing ZhaoDepartment of Mathematics, Logistical Engineering University, Chongqing, 400016, P.R. China.ORCID 0000-0002-2439-2876
Shan LinShanghai Institute of Pharmaceutical Industry, China State Institute of Pharmaceutical Industry, Shanghai, 201203, P.R. China.
Runhui LiuSchool of Pharmacy, Second Military Medical University, Shanghai, 200433, P.R. China.
Honglin LiState Key Laboratory of Bioreactor Engineering, Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science and Technology, Shanghai, 200237, P.R. China. hlli@ecust.edu.cn.
Xuan LiKey Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200032, P.R. China. lixuan@sibs.ac.cn.
Weidong ZhangSchool of Pharmacy, Second Military Medical University, Shanghai, 200433, P.R. China. wdzhangy@hotmail.com.
Second Military Medical University · CNChinese Academy of Sciences · CNEast China University of Science and Technology · CNPLA Army Service Academy · CNShanghai Institute of Pharmaceutical Industry · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Traditional Chinese medicines (TCMs) have important therapeutic value in long-term clinical practice. However, because TCMs contain diverse ingredients and have complex effects on the human body, the molecular mechanisms of TCMs are poorly understood. In this work, we determined the gene expression profiles of cells in response to TCM components to investigate TCM activities at the molecular and cellular levels. MCF7 cells were separately treated with 102 different molecules from TCMs, and their gene expression profiles were compared with the Connectivity Map (CMAP). To demonstrate the reliability and utility of our approach, we used nitidine chloride (NC) from the root of Zanthoxylum nitidum, a topoisomerase I/II inhibitor and α-adrenoreceptor antagonist, as an example to study the molecular function of TCMs using CMAP data as references. We successfully applied this approach to the four ingredients in Danshen and analyzed the synergistic mechanism of TCM components. The results demonstrate that our newly generated TCM data and related methods are valuable in the analysis and discovery of the molecular actions of TCM components. This is the first work to establish gene expression profiles for the study of TCM components and serves as a template for general TCM research.

Indexed as

Medicine, Chinese TraditionalTranscriptomeBenzophenanthridinesCell Line, TumorDatabases, FactualDrugs, Chinese HerbalHumansZanthoxylumBenzophenanthridinesDrugs, Chinese Herbalnitidine

Identifiers

PMID28336967
PMCPMC5428649
OpenAlexW2595454228

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.