Evidence map›Paper›PMID 28336910›Full record

ArticleScientific reports2017

Populus trichocarpa encodes small, effector-like secreted proteins that are highly induced during mutualistic symbiosis.

Jonathan M Plett, Hengfu Yin, Ritesh Mewalal, Rongbin Hu, Ting Li, Priya Ranjan, Sara Jawdy, Henrique C De Paoli, George Butler, Tessa Maureen Burch-Smith and 8 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
8.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Fungal Effectoromics: A World in Constant Evolution.International journal of molecular sciences · 2022
    Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. The Ectomycorrhizal FungusThe Plant cell · 2019
    Article
  16. Identification ofFrontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 3 countries.

Jonathan M PlettINRA, UMR 1136 INRA-University of Lorraine, Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRA-Nancy, 54280, Champenoux, France.
Hengfu YinBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.ORCID 0000-0002-0720-5311
Ritesh MewalalBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.ORCID 0000-0002-0153-2434
Rongbin HuBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.ORCID 0000-0001-5921-6891
Ting LiBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Priya RanjanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Sara JawdyBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Henrique C De PaoliBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.ORCID 0000-0001-8494-0603
George ButlerDepartment of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, TN, 37996, USA.
Tessa Maureen Burch-SmithDepartment of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, TN, 37996, USA.
Hao-Bo GuoDepartment of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, TN, 37996, USA.
Chun Ju ChenBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Annegret KohlerINRA, UMR 1136 INRA-University of Lorraine, Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRA-Nancy, 54280, Champenoux, France.
Ian C AndersonHawkesbury Institute for the Environment, University of Western Sydney, Richmond, 2753, NSW, Australia.
Jessy L LabbéBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.ORCID 0000-0003-0368-2054
Francis MartinINRA, UMR 1136 INRA-University of Lorraine, Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRA-Nancy, 54280, Champenoux, France.ORCID 0000-0002-4737-3715
Gerald A TuskanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Xiaohan YangBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA. yangx@ornl.gov.ORCID 0000-0001-5207-4210
Oak Ridge National Laboratory · USInteractions Arbres-Microorganismes · FRUniversity of Tennessee at Knoxville · USWestern Sydney University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During symbiosis, organisms use a range of metabolic and protein-based signals to communicate. Of these protein signals, one class is defined as 'effectors', i.e., small secreted proteins (SSPs) that cause phenotypical and physiological changes in another organism. To date, protein-based effectors have been described in aphids, nematodes, fungi and bacteria. Using RNA sequencing of Populus trichocarpa roots in mutualistic symbiosis with the ectomycorrhizal fungus Laccaria bicolor, we sought to determine if host plants also contain genes encoding effector-like proteins. We identified 417 plant-encoded putative SSPs that were significantly regulated during this interaction, including 161 SSPs specific to P. trichocarpa and 15 SSPs exhibiting expansion in Populus and closely related lineages. We demonstrate that a subset of these SSPs can enter L. bicolor hyphae, localize to the nucleus and affect hyphal growth and morphology. We conclude that plants encode proteins that appear to function as effector proteins that may regulate symbiotic associations.

Indexed as

SymbiosisCell NucleusLaccariaModels, BiologicalPlant RootsPopulus

Identifiers

PMID28336910
PMCPMC5428498
OpenAlexW2595503608

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.