Evidence map›Paper›PMID 28336516›Full record

ArticleGenes & development2017

A novel role of the Dna2 translocase function in DNA break resection.

Adam S Miller, James M Daley, Nhung Tuyet Pham, Hengyao Niu, Xiaoyu Xue, Grzegorz Ira, Patrick Sung

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. International journal of molecular sciences · 2021
    Review
  10. Article
  11. Review
  12. CtIP promotes the motor activity of DNA2 to accelerate long-range DNA end resection.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Review
  14. Article
  15. Novel mutations in DNA2 associated with myopathy and mtDNA instability.Annals of clinical and translational neurology · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Regulatory control of Sgs1 and Dna2 during eukaryotic DNA end resection.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Adam S MillerDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
James M DaleyDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520, USA.ORCID 0000-0002-7706-6134
Nhung Tuyet PhamMolecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.
Hengyao NiuMolecular and Cellular Biochemistry Department, Indiana University, Bloomington, Indiana 47405, USA.
Xiaoyu XueDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Grzegorz IraMolecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.
Patrick SungDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Yale University · USBaylor College of Medicine · USIndiana University Bloomington · US

Funding

YEAST DNA REPAIR GENES AND PROTEINS OF THE RAD52 GROUPR01ES007061 · NIEHS · YALE UNIVERSITY · PI Patrick Sung · 1995 to 2026
$9.4M
Regulation of DNA recombination in Saccharomyces cerevisiaeR01GM080600 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI IRA, GRZEGORZ A · 2007 to 2024
$5.5M
Genome Maintenance via the BRCA-PALB2 Tumor Suppressor NetworkR01CA220123 · NCI · YALE UNIVERSITY · PI SUNG, PATRICK · 2017 to 2019
$1.2M
Mechanisms and Crosstalk of DNA Break Resection PathwaysR00ES021441 · NIEHS · TRUSTEES OF INDIANA UNIVERSITY · PI NIU, HENGYAO · 2015 to 2017
$747k
The Role of Small RNAs in Homologous RecombinationR21ES027154 · NIEHS · YALE UNIVERSITY · PI DALEY, JAMES MATTHEW · 2016 to 2017
$461k
Mechanisms and Crosstalk of DNA Break Resection PathwaysK99ES021441 · NIEHS · YALE UNIVERSITY · PI NIU, HENGYAO · 2012 to 2013
$180k
NCI NIH HHS R01 CA220123NIEHS NIH HHS K99 ES021441NIEHS NIH HHS R00 ES021441NIEHS NIH HHS R01 ES007061NIEHS NIH HHS R21 ES027154NIGMS NIH HHS R01 GM080600
6 · The paper itself

Abstract

DNA double-strand break repair by homologous recombination entails nucleolytic resection of the 5' strand at break ends. Dna2, a flap endonuclease with 5'-3' helicase activity, is involved in the resection process. The Dna2 helicase activity has been implicated in Okazaki fragment processing during DNA replication but is thought to be dispensable for DNA end resection. Unexpectedly, we found a requirement for the helicase function of Dna2 in end resection in budding yeast cells lacking exonuclease 1. Biochemical analysis reveals that ATP hydrolysis-fueled translocation of Dna2 on ssDNA facilitates 5' flap cleavage near a single-strand-double strand junction while attenuating 3' flap incision. Accordingly, the ATP hydrolysis-defective dna2-K1080E mutant is less able to generate long products in a reconstituted resection system. Our study thus reveals a previously unrecognized role of the Dna2 translocase activity in DNA break end resection and in the imposition of the 5' strand specificity of end resection.

Indexed as

5' Flanking RegionAdenosine TriphosphateDNA Breaks, Double-StrandedDNA End-Joining RepairDNA HelicasesDNA RepairMutationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine TriphosphateDNA2 protein, S cerevisiaeDNA HelicasesSaccharomyces cerevisiae ProteinsDNA repairdouble-strand breakend resectionhomologous recombination

Identifiers

PMID28336516
PMCPMC5393064
OpenAlexW2598081290

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.