Evidence map›Paper›PMID 28335481›Full record

ArticleInternational journal of molecular sciences2017

Genetic Variants Contributing to Colistin Cytotoxicity: Identification of TGIF1 and HOXD10 Using a Population Genomics Approach.

Michael T Eadon, Ronald J Hause, Amy L Stark, Ying-Hua Cheng, Heather E Wheeler, Kimberly S Burgess, Eric A Benson, Patrick N Cunningham, Robert L Bacallao, Pierre C Dagher and 2 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Journal of drug delivery · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Michael T EadonDivision of Nephrology, Indiana University School of Medicine, Indianapolis, IN 46202, USA. meadon@iupui.edu.
Ronald J HauseJuno Therapeutics, Seattle, WA 98109, USA. ronaldhause@junotherapeutics.com.
Amy L StarkDepartment of Biological Sciences, University of Notre Dame, South Bend, IN 46556, USA. astark1@nd.edu.
Ying-Hua ChengDivision of Nephrology, Indiana University School of Medicine, Indianapolis, IN 46202, USA. yicheng@iu.edu.
Heather E WheelerDepartment of Biology, Department of Computer Science, Loyola University Chicago, Chicago, IL 60660, USA. Hwheeler1@luc.edu.
Kimberly S BurgessDivision of Clinical Pharmacology, Indiana University School of Medicine, Indianapolis, IN 46202, USA. ksburges@iu.edu.
Eric A BensonDivision of Clinical Pharmacology, Indiana University School of Medicine, Indianapolis, IN 46202, USA. eabenson@iu.edu.
Patrick N CunninghamDepartment of Medicine, University of Chicago, Chicago, IL 60637, USA. pcunning@medicine.bsd.uchicago.edu.
Robert L BacallaoDivision of Nephrology, Indiana University School of Medicine, Indianapolis, IN 46202, USA. rbacalla@iu.edu.
Pierre C DagherDivision of Nephrology, Indiana University School of Medicine, Indianapolis, IN 46202, USA. pdaghe2@iu.edu.
Todd C SkaarDivision of Clinical Pharmacology, Indiana University School of Medicine, Indianapolis, IN 46202, USA. tskaar@iu.edu.
M Eileen DolanDepartment of Medicine, University of Chicago, Chicago, IL 60637, USA. edolan@medicine.bsd.uchicago.edu.
Indiana University School of MedicineUniversity of Chicago · USLoyola University Chicago · USUniversity of Notre Dame · US

Funding

Whole GenomeU01GM061393 · NIGMS · UNIVERSITY OF CHICAGO · PI DOLAN, MARY EILEEN · 2000 to 2014
$39.0M
CLINICAL THERAPEUTICST32GM007019 · NIGMS · UNIVERSITY OF CHICAGO · PI Peter Hugh O'Donnell, MARK J RATAIN · 1985 to 2026
$8.7M
Regulation of mRNA splicing by intronic genetic variantsR01CA213466 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI LIU, YUNLONG, SKAAR, TODD C. · 2016 to 2018
$1.7M
Genetic determinants associated with pemetrexed response and toxicityR01CA136765 · NCI · UNIVERSITY OF CHICAGO · PI DOLAN, MARY EILEEN · 2009 to 2013
$1.6M
Acute inhibition of renal gene expression to prevent nephrotoxicity.K08DK107864 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI EADON, MICHAEL THOMAS · 2016 to 2020
$772k
Exosome kinetics in vivo: cell type and drug specific effectsK08GM119006 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI BENSON, ERIC · 2016 to 2020
$724k
Pharmacogenomics of the chemotherapeutic agent paclitaxelF32CA165823 · NCI · UNIVERSITY OF CHICAGO · PI WHEELER, HEATHER ELIZABETH · 2012 to 2013
$106k
Age-related changes in microRNA expression effect on drug metabolism in human liverF31GM119401 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI COLLINS, KIMBERLY S. · 2016 to 2017
$40k
BLRD VA I01 BX002901NCI NIH HHS F32 CA165823NCI NIH HHS R01 CA136765NCI NIH HHS R01 CA213466NIDDK NIH HHS K08 DK107864NIGMS NIH HHS F31 GM119401NIGMS NIH HHS K08 GM119006NIGMS NIH HHS T32 GM007019NIGMS NIH HHS U01 GM061393
6 · The paper itself

Abstract

Colistin sulfate (polymixin E) is an antibiotic prescribed with increasing frequency for severe Gram-negative bacterial infections. As nephrotoxicity is a common side effect, the discovery of pharmacogenomic markers associated with toxicity would benefit the utility of this drug. Our objective was to identify genetic markers of colistin cytotoxicity that were also associated with expression of key proteins using an unbiased, whole genome approach and further evaluate the functional significance in renal cell lines. To this end, we employed International HapMap lymphoblastoid cell lines (LCLs) of Yoruban ancestry with known genetic information to perform a genome-wide association study (GWAS) with cellular sensitivity to colistin. Further association studies revealed that single nucleotide polymorphisms (SNPs) associated with gene expression and protein expression were significantly enriched in SNPs associated with cytotoxicity (

Indexed as

Anti-Bacterial AgentsCell LineCell Line, TumorColistinDrug ResistanceGenome-Wide Association StudyHomeodomain ProteinsHumansPolymorphism, Single NucleotideQuantitative Trait LociRepressor ProteinsTranscription FactorsAnti-Bacterial AgentsColistinHomeodomain ProteinsHOXD10 protein, humanRepressor ProteinsTGIF1 protein, humanTranscription FactorscolistinHOXD10lymphoblastoid cell linenephrotoxicityTGIF1

Identifiers

PMID28335481
PMCPMC5372673
OpenAlexW2601878848

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.