Evidence map›Paper›PMID 28335001›Full record

ArticleNucleic acids research2017

FASTKD1 and FASTKD4 have opposite effects on expression of specific mitochondrial RNAs, depending upon their endonuclease-like RAP domain.

Erik Boehm, Sofia Zaganelli, Kinsey Maundrell, Alexis A Jourdain, Stéphane Thore, Jean-Claude Martinou

Open access · goldAbstract readComparative Study
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 62 citations in OpenAlex.

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  19. How RNases Shape Mitochondrial Transcriptomes.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Erik BoehmCell Biology Department, University of Geneva, 1211 Geneva 4, Switzerland.
Sofia ZaganelliCell Biology Department, University of Geneva, 1211 Geneva 4, Switzerland.
Kinsey MaundrellCell Biology Department, University of Geneva, 1211 Geneva 4, Switzerland.
Alexis A JourdainCell Biology Department, University of Geneva, 1211 Geneva 4, Switzerland.
Stéphane ThoreINSERM U-1212, CNRS UMR 5320, Université de Bordeaux, ARNA Laboratory, Bordeaux 33000, France.
Jean-Claude MartinouCell Biology Department, University of Geneva, 1211 Geneva 4, Switzerland.
University of Geneva · CHUniversité de Bordeaux · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

FASTK family proteins have been identified as regulators of mitochondrial RNA homeostasis linked to mitochondrial diseases, but much remains unknown about these proteins. We show that CRISPR-mediated disruption of FASTKD1 increases ND3 mRNA level, while disruption of FASTKD4 reduces the level of ND3 and of other mature mRNAs including ND5 and CYB, and causes accumulation of ND5-CYB precursor RNA. Disrupting both FASTKD1 and FASTKD4 in the same cell results in decreased ND3 mRNA similar to the effect of depleting FASTKD4 alone, indicating that FASTKD4 loss is epistatic. Interestingly, very low levels of FASTKD4 are sufficient to prevent ND3 loss and ND5-CYB precursor accumulation, suggesting that FASTKD4 may act catalytically. Furthermore, structural modeling predicts that each RAP domain of FASTK proteins contains a nuclease fold with a conserved aspartate residue at the putative active site. Accordingly, mutation of this residue in FASTKD4 abolishes its function. Experiments with FASTK chimeras indicate that the RAP domain is essential for the function of the FASTK proteins, while the region upstream determines RNA targeting and protein localization. In conclusion, this paper identifies new aspects of FASTK protein biology and suggests that the RAP domain function depends on an intrinsic nucleolytic activity.

Indexed as

Amino Acid SequenceCRISPR-Cas SystemsCytochromes bElectron Transport Complex IGene Expression RegulationGene Knockdown TechniquesHEK293 CellsHumansMitochondriaMitochondrial ProteinsModels, MolecularProtein ConformationProtein DomainsRNARNA-Binding ProteinsRNA, MessengerCytochromes bElectron Transport Complex IFASTKD1 protein, humanMitochondrial ProteinsMT-ND3 protein, humanMT-ND5 protein, humanRNARNA-Binding ProteinsRNA, MessengerRNA, MitochondrialTBRG4 protein, human

Identifiers

PMID28335001
PMCPMC5449608
OpenAlexW2592838654

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.