Evidence map›Paper›PMID 28334903›Full record

ArticleNucleic acids research2017

N6-methyladenosine alters RNA structure to regulate binding of a low-complexity protein.

Nian Liu, Katherine I Zhou, Marc Parisien, Qing Dai, Luda Diatchenko, Tao Pan

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 536 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
536citing papers in PubMed, 1 pooled it
22.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

536 citing papers in PubMed, 1 synthesis or guideline pooled it, 795 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. mPharmaceuticals (Basel, Switzerland) · 2026
    Review
  11. Article
  12. SuppressedInternational journal of molecular sciences · 2026
    Article
  13. The Role of NMedComm · 2026
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  14. Methylation marks breast cancer metastasis: The roles of mThe Journal of biological chemistry · 2026
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  15. RBM45 Preferential Binding to mThe journal of physical chemistry. B · 2026
    Article
  16. FTO separation-of-function mutations alter mbioRxiv : the preprint server for biology · 2026
    Article
  17. Interplay of RNA mFASEB bioAdvances · 2026
    Article
  18. Review
  19. Review
  20. Review

476 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Nian LiuDepartment of Chemistry, University of Chicago, Chicago, IL 60637, USA.
Katherine I ZhouMedical Scientist Training Program, University of Chicago, Chicago, IL 60637, USA.
Marc ParisienThe Alan Edwards Centre for Research on Pain, Department of Dentistry, McGill University, Montréal, Québec H3A 0G1, Canada.
Qing DaiDepartment of Chemistry, University of Chicago, Chicago, IL 60637, USA.
Luda DiatchenkoThe Alan Edwards Centre for Research on Pain, Department of Dentistry, McGill University, Montréal, Québec H3A 0G1, Canada.
Tao PanDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL 60637, USA.
University of Chicago · USMcGill University · CA

Funding

MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
Recognition and mechanism of N6-methyl adenosine modificationsR01GM113194 · NIGMS · UNIVERSITY OF CHICAGO · PI PAN, TAO · 2015 to 2022
$2.5M
Role of m6A in HNRNPG protein localization and HNRNPG-regulated alternative splicingF30GM120917 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHOU, KATHERINE ISMEI · 2016 to 2018
$147k
NIGMS NIH HHS F30 GM120917NIGMS NIH HHS R01 GM113194NIGMS NIH HHS T32 GM007281
6 · The paper itself

Abstract

N6-methyladenosine (m6A) is the most abundant internal modification in eukaryotic messenger RNA (mRNA), and affects almost every stage of the mRNA life cycle. The YTH-domain proteins can specifically recognize m6A modification to control mRNA maturation, translation and decay. m6A can also alter RNA structures to affect RNA-protein interactions in cells. Here, we show that m6A increases the accessibility of its surrounding RNA sequence to bind heterogeneous nuclear ribonucleoprotein G (HNRNPG). Furthermore, HNRNPG binds m6A-methylated RNAs through its C-terminal low-complexity region, which self-assembles into large particles in vitro. The Arg-Gly-Gly repeats within the low-complexity region are required for binding to the RNA motif exposed by m6A methylation. We identified 13,191 m6A sites in the transcriptome that regulate RNA-HNRNPG interaction and thereby alter the expression and alternative splicing pattern of target mRNAs. Low-complexity regions are pervasive among mRNA binding proteins. Our results show that m6A-dependent RNA structural alterations can promote direct binding of m6A-modified RNAs to low-complexity regions in RNA binding proteins.

Indexed as

Nucleic Acid ConformationAdenosineAlternative SplicingConserved SequenceGene Knockdown TechniquesHEK293 CellsHeLa CellsHeterogeneous-Nuclear RibonucleoproteinsHumansMethyltransferasesOligoribonucleotidesPhylogenyProtein BindingRNARNA InterferenceRNA, Long NoncodingAdenosineHeterogeneous-Nuclear RibonucleoproteinsMALAT1 long non-coding RNA, humanMethyltransferasesMETTL3 protein, humanMETTL4 protein, humanN-methyladenosineOligoribonucleotidesRBMX protein, humanRNARNA, Long NoncodingRNA, Small Interfering

Identifiers

PMID28334903
PMCPMC5449601
OpenAlexW2589225545

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.