ArticleBioinformatics (Oxford, England)2017
poRe GUIs for parallel and real-time processing of MinION sequence data.
Article in Bioinformatics (Oxford, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
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Who cites it
4 citing papers in PubMed.
- PathoLive-Real-Time Pathogen Identification from Metagenomic Illumina Datasets.Life (Basel, Switzerland) · 2022Article
- Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery.Nature biotechnology · 2019Article
- MinIONQC: fast and simple quality control for MinION sequencing data.Bioinformatics (Oxford, England) · 2019Article
- Article
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Authors and funding
2 authors.
Funding
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Abstract
motivationOxford Nanopore's MinION device has matured rapidly and is now capable of producing over one million reads and several gigabases of sequence data per run. The nature of the MinION output requires new tools that are easy to use by scientists with a range of computational skills and which enable quick and simple QC and data extraction from MinION runs.
resultsWe have developed two GUIs for the R package poRe that allow parallel and real-time processing of MinION datasets. Both GUIs are capable of extracting sequence- and meta- data from large MinION datasets via a friendly point-and-click interface using commodity hardware. AVAILABILITY AND IMPLEMENTATION: The GUIs are packaged within poRe which is available on SourceForge: https://sourceforge.net/projects/rpore/files/ . CONTACT: mick.watson@roslin.ed.ac.uk.
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