Evidence map›Paper›PMID 28332630›Full record

ArticleScientific reports2017

PML nuclear bodies contribute to the basal expression of the mTOR inhibitor DDIT4.

Jayme Salsman, Alex Stathakis, Ellen Parker, Dudley Chung, Livia E Anthes, Kara L Koskowich, Sara Lahsaee, Daniel Gaston, Kimberly R Kukurba, Kevin S Smith and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. The PML hub: An emerging actor of leukemia therapies.The Journal of experimental medicine · 2023
    Article
  6. Review
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Jayme SalsmanDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, B3H 4R2, Canada.
Alex StathakisDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, B3H 4R2, Canada.
Ellen ParkerDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, B3H 4R2, Canada.
Dudley ChungDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, B3H 4R2, Canada.
Livia E AnthesDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, B3H 4R2, Canada.
Kara L KoskowichDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, B3H 4R2, Canada.
Sara LahsaeeDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, B3H 4R2, Canada.
Daniel GastonDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, B3H 4R2, Canada.
Kimberly R KukurbaDepartments of Genetics and Pathology, Stanford University, Stanford, California, 94305, USA.
Kevin S SmithDepartments of Genetics and Pathology, Stanford University, Stanford, California, 94305, USA.
Ian C ChuteAtlantic Cancer Research Institute, Moncton, New Brunswick, E1C 8X3, Canada.
Daniel LégerAtlantic Cancer Research Institute, Moncton, New Brunswick, E1C 8X3, Canada.
Laura D FrostAtlantic Cancer Research Institute, Moncton, New Brunswick, E1C 8X3, Canada.
Stephen B MontgomeryDepartments of Genetics and Pathology, Stanford University, Stanford, California, 94305, USA.
Stephen M LewisAtlantic Cancer Research Institute, Moncton, New Brunswick, E1C 8X3, Canada.
Christopher EskiwDepartment of Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, S7N5A8, Canada.
Graham DellaireDepartment of Pathology, Dalhousie University, Halifax, Nova Scotia, B3H 4R2, Canada.
Dalhousie University · CAAtlantic Cancer Research Institute · CAStanford University · USNova Scotia Health Authority · CAUniversity of New Brunswick · CAUniversity of Saskatchewan · CA

Funding

Clinically Relevant Genome Variation DatabaseU01HG007436 · NHGRI · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL, PLON, SHARON E. · 2013 to 2016
$10.5M
Methods for high-resolution analysis of genetic effects on gene expressionR01MH101814 · NIMH · UNIVERSITY OF GENEVA · PI BUSTAMANTE, CARLOS DANIEL, DERMITZAKIS, EMMANOUIL · 2013 to 2016
$2.3M
Predicting causal non-coding variants in a founder populationR01HG008150 · NHGRI · STANFORD UNIVERSITY · PI MONTGOMERY, STEPHEN · 2015 to 2017
$1.4M
CIHR MOP-84260NHGRI NIH HHS R01 HG008150NHGRI NIH HHS U01 HG007436NIMH NIH HHS R01 MH101814
6 · The paper itself

Abstract

The promyelocytic leukemia (PML) protein is an essential component of PML nuclear bodies (PML NBs) frequently lost in cancer. PML NBs coordinate chromosomal regions via modification of nuclear proteins that in turn may regulate genes in the vicinity of these bodies. However, few PML NB-associated genes have been identified. PML and PML NBs can also regulate mTOR and cell fate decisions in response to cellular stresses. We now demonstrate that PML depletion in U2OS cells or TERT-immortalized normal human diploid fibroblasts results in decreased expression of the mTOR inhibitor DDIT4 (REDD1). DNA and RNA immuno-FISH reveal that PML NBs are closely associated with actively transcribed DDIT4 loci, implicating these bodies in regulation of basal DDIT4 expression. Although PML silencing did reduce the sensitivity of U2OS cells to metabolic stress induced by metformin, PML loss did not inhibit the upregulation of DDIT4 in response to metformin, hypoxia-like (CoCl

Indexed as

Gene Expression RegulationCell Line, TumorCobaltFibroblastsGene Knockout TechniquesGene SilencingGenetic LociHumansHypoxiaNeoplasmsPromyelocytic Leukemia ProteinProtein BindingProtein BiosynthesisRadiation, IonizingTOR Serine-Threonine KinasesTranscription FactorsCobaltcobaltous chlorideDDIT4 protein, humanPromyelocytic Leukemia ProteinTOR Serine-Threonine KinasesTranscription Factors

Identifiers

PMID28332630
PMCPMC5362932
OpenAlexW2599797030

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.