Evidence map›Paper›PMID 28332571›Full record

Observational studyNature communications2017

Profiling protein expression in circulating tumour cells using microfluidic western blotting.

Elly Sinkala, Elodie Sollier-Christen, Corinne Renier, Elisabet Rosàs-Canyelles, James Che, Kyra Heirich, Todd A Duncombe, Julea Vlassakis, Kevin A Yamauchi, Haiyan Huang and 2 more

Abstract readObservational StudyValidation Study
In one paragraph

Observational study in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed.

  1. Single-Cell Protein Assays in Context: From 2D to 3D and In Situ Analysis.Annual review of analytical chemistry (Palo Alto, Calif.) · 2026
    Review
  2. Article
  3. Single-Cell Nucleus Extraction with Cellular Indexing.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
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49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Elly SinkalaDepartment of Bioengineering, University of California, Berkeley, 308B Stanley Hall, MC 1762, Berkeley, California 94720, USA.
Elodie Sollier-ChristenVortex Biosciences, Inc., Menlo Park, California 94025, USA.
Corinne RenierVortex Biosciences, Inc., Menlo Park, California 94025, USA.
Elisabet Rosàs-CanyellesDepartment of Bioengineering, University of California, Berkeley, 308B Stanley Hall, MC 1762, Berkeley, California 94720, USA.
James CheVortex Biosciences, Inc., Menlo Park, California 94025, USA.
Kyra HeirichDepartment of Surgery, Stanford University School of Medicine, Stanford, California 94305, USA.
Todd A DuncombeDepartment of Bioengineering, University of California, Berkeley, 308B Stanley Hall, MC 1762, Berkeley, California 94720, USA.
Julea VlassakisDepartment of Bioengineering, University of California, Berkeley, 308B Stanley Hall, MC 1762, Berkeley, California 94720, USA.
Kevin A YamauchiDepartment of Bioengineering, University of California, Berkeley, 308B Stanley Hall, MC 1762, Berkeley, California 94720, USA.
Haiyan HuangDepartment of Statistics, University of California, Berkeley, California 94720, USA.
Stefanie S JeffreyDepartment of Surgery, Stanford University School of Medicine, Stanford, California 94305, USA.
Amy E HerrDepartment of Bioengineering, University of California, Berkeley, 308B Stanley Hall, MC 1762, Berkeley, California 94720, USA.ORCID 0000-0002-6906-2985

Funding

Towards High Throughput Proteomics: A Micro/nanofluidic Framework for Blotless WDP2OD007294 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI HERR, AMY ELIZABETH · 2010 to 2013
$2.5M
Microfluidic Western Blotting for Targeted Proteomic Analysis of Single Circulating Tumor CellsR21CA183679 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI HERR, AMY ELIZABETH · 2015 to 2017
$634k
Measuring biophysical & protein signaling indicators of invasion potential in single-circulating tumor cellsR21EB019880 · NIBIB · UNIVERSITY OF CALIFORNIA BERKELEY · PI HERR, AMY ELIZABETH · 2015 to 2016
$464k
NCI NIH HHS R21 CA183679NIBIB NIH HHS R21 EB019880NIH HHS DP2 OD007294
6 · The paper itself

Abstract

Circulating tumour cells (CTCs) are rare tumour cells found in the circulatory system of certain cancer patients. The clinical and functional significance of CTCs is still under investigation. Protein profiling of CTCs would complement the recent advances in enumeration, transcriptomic and genomic characterization of these rare cells and help define their characteristics. Here we describe a microfluidic western blot for an eight-plex protein panel for individual CTCs derived from estrogen receptor-positive (ER+) breast cancer patients. The precision handling and analysis reveals a capacity to assay sparingly available patient-derived CTCs, a biophysical CTC phenotype more lysis-resistant than breast cancer cell lines, a capacity to report protein expression on a per CTC basis and two statistically distinct GAPDH subpopulations within the patient-derived CTCs. Targeted single-CTC proteomics with the capacity for archivable, multiplexed protein analysis offers a unique, complementary taxonomy for understanding CTC biology and ascertaining clinical impact.

Indexed as

AdultAgedBlotting, WesternBreast NeoplasmsCell Line, TumorFemaleGene Expression ProfilingGlyceraldehyde-3-Phosphate DehydrogenasesHumansMicrofluidicsMiddle AgedNeoplastic Cells, CirculatingPilot ProjectsProteomicsReceptors, EstrogenReproducibility of ResultsGlyceraldehyde-3-Phosphate DehydrogenasesReceptors, Estrogen

Identifiers

PMID28332571
PMCPMC5376644

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.