Evidence map›Paper›PMID 28331547›Full record

ArticleMolecular cytogenetics2017

Application of high-resolution genomic profiling in the differential diagnosis of liposarcoma.

Magdalena Koczkowska, Beata Stefania Lipska-Ziętkiewicz, Mariola Iliszko, Janusz Ryś, Markku Miettinen, Jerzy Lasota, Wojciech Biernat, Agnieszka Harazin-Lechowska, Anna Kruczak, Janusz Limon

Abstract read
In one paragraph

Article in Molecular cytogenetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Comprehensive Bioinformatic Analysis Genes Associated to the Prognosis of Liposarcoma.Medical science monitor : international medical journal of experimental and clinical research · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Magdalena KoczkowskaDepartment of Biology and Genetics, Medical University of Gdansk, 1 Debinki Street, 80-211 Gdansk, Poland.ORCID 0000-0001-9451-8027
Beata Stefania Lipska-ZiętkiewiczDepartment of Biology and Genetics, Medical University of Gdansk, 1 Debinki Street, 80-211 Gdansk, Poland.
Mariola IliszkoDepartment of Biology and Genetics, Medical University of Gdansk, 1 Debinki Street, 80-211 Gdansk, Poland.
Janusz RyśDepartment of Tumor Pathology, M. Sklodowska-Curie Memorial Institute of Oncology, 11 Garncarska Street, 31-115 Krakow, Poland.
Markku MiettinenLaboratory of Pathology, National Cancer Institute, Building 10, Room B1B47, 10 Center Drive, Bethesda, 20892 MD USA.
Jerzy LasotaLaboratory of Pathology, National Cancer Institute, Building 10, Room B1B47, 10 Center Drive, Bethesda, 20892 MD USA.
Wojciech BiernatDepartment of Pathology, Medical University of Gdansk, 17 Smoluchowskiego Street, 80-214 Gdansk, Poland.
Agnieszka Harazin-LechowskaDepartment of Tumor Pathology, M. Sklodowska-Curie Memorial Institute of Oncology, 11 Garncarska Street, 31-115 Krakow, Poland.
Anna KruczakDepartment of Tumor Pathology, M. Sklodowska-Curie Memorial Institute of Oncology, 11 Garncarska Street, 31-115 Krakow, Poland.
Janusz LimonDepartment of Biology and Genetics, Medical University of Gdansk, 1 Debinki Street, 80-211 Gdansk, Poland.

Funding

Genreal Surgical PathologyZIDBC011291 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MIETTINEN, MARKKU · 2010 to 2025
$30.3M
6 · The paper itself

Abstract

backgroundRarity and heterogeneity of liposarcomas (LPS) make their diagnosis difficult even for sarcoma-experts pathologists. The molecular mechanism underlying the development and progression of liposarcomas (LPS) remains only partially known. In order to identify and compare the genomic profiles, we analyzed array-based comparative genomic hybridization (array-CGH) profiles of 66 liposarcomas, including well-differentiated (WDLPS), dedifferentiated (DDLPS) and myxoid (MLPS) subtypes.

resultsCopy number aberrations (CNAs) were identified in 98% of WDLPS and DDLPS and in 95% of MLPS cases. The minimal common region of amplification at 12q14.1q21.1 was observed in 96% of WDLPS and DDLPS cases. Four regions of CNAs, including losses of chromosome 6, 11 and 13 and gains of chromosome 14 were classified as recurrent in DDLPS; at least one was identified in 74% of DDLPS tumors. The DDLPS-associated losses were much more common in tumors with increased genomic complexity. In MLPS, the most frequent CNAs were losses of chromosome 6 (40%) and gains of chromosome 1 (30%), with the minimal overlapping regions 6q14.1q22.31 and 1q25.1q32.2, respectively.

conclusionsOur findings show that the application of array-CGH allows to delineate clearly the genomic profiles of WDLPS, DDLPS and MLPS that reflect biological differences between these tumors. Although CNAs varied widely, the subtypes of tumors have characteristic genomic profiles that could facilitate the differential diagnosis of LPS subtypes, especially between WDLPS and DDLPS.

Indexed as

Array-based comparative genomic hybridization (array-CGH)Copy number aberrationsGenomic imbalancesGenomic profilingLiposarcoma

Identifiers

PMID28331547
PMCPMC5356274

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.