Evidence map›Paper›PMID 28331089›Full record

ArticleJournal of virology2017

Diversity, Distribution, and Evolution of Tomato Viruses in China Uncovered by Small RNA Sequencing.

Chenxi Xu, Xuepeng Sun, Angela Taylor, Chen Jiao, Yimin Xu, Xiaofeng Cai, Xiaoli Wang, Chenhui Ge, Guanghui Pan, Quanxi Wang and 2 more

Open access · bronzeAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
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  7. Advances and Prospects of Virus-Resistant Breeding in Tomatoes.International journal of molecular sciences · 2023
    Review
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  13. Genomic Characterization of aMicrobiology resource announcements · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Chenxi XuDevelopment and Collaborative Innovation Center of Plant Germplasm Resources, College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China.
Xuepeng SunBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA xs57@cornell.edu wangquanhua@shnu.edu.cn.
Angela TaylorBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA.
Chen JiaoBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA.
Yimin XuBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA.
Xiaofeng CaiDevelopment and Collaborative Innovation Center of Plant Germplasm Resources, College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China.
Xiaoli WangDevelopment and Collaborative Innovation Center of Plant Germplasm Resources, College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China.
Chenhui GeDevelopment and Collaborative Innovation Center of Plant Germplasm Resources, College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China.
Guanghui PanChongqing Academy of Agricultural Science, Chongqing, China.
Quanxi WangDevelopment and Collaborative Innovation Center of Plant Germplasm Resources, College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China.
Zhangjun FeiDevelopment and Collaborative Innovation Center of Plant Germplasm Resources, College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China.ORCID http://orcid.org/0000-0001-9684-1450
Quanhua WangDevelopment and Collaborative Innovation Center of Plant Germplasm Resources, College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China xs57@cornell.edu wangquanhua@shnu.edu.cn.
Shanghai Normal University · CNCornell University · USChongqing Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tomato is a major vegetable crop that has tremendous popularity. However, viral disease is still a major factor limiting tomato production. Here, we report the tomato virome identified through sequencing small RNAs of 170 field-grown samples collected in China. A total of 22 viruses were identified, including both well-documented and newly detected viruses. The tomato viral community is dominated by a few species, and they exhibit polymorphisms and recombination in the genomes with cold spots and hot spots. Most samples were coinfected by multiple viruses, and the majority of identified viruses are positive-sense single-stranded RNA viruses. Evolutionary analysis of one of the most dominant tomato viruses,

Indexed as

Evolution, MolecularGenetic VariationAnimalsAphidsBegomovirusChinaGenome, ViralHost-Pathogen InteractionsPlant DiseasesPlant LeavesPlant VirusesRhabdoviridaeRNA, Small InterferingRNA, ViralSequence Analysis, RNASolanum lycopersicumRNA, Small InterferingRNA, Viralsmall RNA sequencingtomato viromeviral diversity and evolution

Identifiers

PMID28331089
PMCPMC5432854
OpenAlexW2603696407

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.