Evidence map›Paper›PMID 28330937›Full record

ArticleThe Journal of cell biology2017

Raft-based sphingomyelin interactions revealed by new fluorescent sphingomyelin analogs.

Masanao Kinoshita, Kenichi G N Suzuki, Nobuaki Matsumori, Misa Takada, Hikaru Ano, Kenichi Morigaki, Mitsuhiro Abe, Asami Makino, Toshihide Kobayashi, Koichiro M Hirosawa and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 129 citations in OpenAlex.

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  20. Towards a Unitary Hypothesis of Alzheimer's Disease Pathogenesis.Journal of Alzheimer's disease : JAD · 2024
    Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 3 countries.

Masanao KinoshitaLipid Active Structure Project, Exploratory Research for Advanced Technology Organization, Japan Science and Technology Agency, Osaka University, Osaka 560-0043, Japan.
Kenichi G N SuzukiInstitute for Integrated Cell-Material Sciences, Kyoto University, Kyoto 606-8507, Japan.
Nobuaki MatsumoriLipid Active Structure Project, Exploratory Research for Advanced Technology Organization, Japan Science and Technology Agency, Osaka University, Osaka 560-0043, Japan matsmori@chem.kyushu-univ.jp akihiro.kusumi@oist.jp.
Misa TakadaDepartment of Chemistry, Graduate School of Science, Osaka University, Osaka 560-0043, Japan.
Hikaru AnoLipid Active Structure Project, Exploratory Research for Advanced Technology Organization, Japan Science and Technology Agency, Osaka University, Osaka 560-0043, Japan.
Kenichi MorigakiResearch Center for Environmental Genomics, Kobe University, Kobe 657-8501, Japan.ORCID 0000-0002-2454-6513
Mitsuhiro AbeCellular Informatics Laboratory, Institute of Physical and Chemical Research, Wako, Saitama 351-0198, Japan.
Asami MakinoCellular Informatics Laboratory, Institute of Physical and Chemical Research, Wako, Saitama 351-0198, Japan.
Toshihide KobayashiUMR 7213 Centre National de la Recherche Scientifique, University of Strasbourg, Illkirch 67401, France.
Koichiro M HirosawaInstitute for Integrated Cell-Material Sciences, Kyoto University, Kyoto 606-8507, Japan.
Takahiro K FujiwaraInstitute for Integrated Cell-Material Sciences, Kyoto University, Kyoto 606-8507, Japan.
Akihiro KusumiInstitute for Integrated Cell-Material Sciences, Kyoto University, Kyoto 606-8507, Japan matsmori@chem.kyushu-univ.jp akihiro.kusumi@oist.jp.ORCID 0000-0002-9558-6950
Michio MurataLipid Active Structure Project, Exploratory Research for Advanced Technology Organization, Japan Science and Technology Agency, Osaka University, Osaka 560-0043, Japan.
Japan Science and Technology Agency · JPKyoto University · JPRIKEN · JPCentre National de la Recherche Scientifique · FRKobe University · JPNational Centre for Biological Sciences · INOkinawa Institute of Science and Technology Graduate University · JPThe University of Osaka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sphingomyelin (SM) has been proposed to form cholesterol-dependent raft domains and sphingolipid domains in the plasma membrane (PM). How SM contributes to the formation and function of these domains remains unknown, primarily because of the scarcity of suitable fluorescent SM analogs. We developed new fluorescent SM analogs by conjugating a hydrophilic fluorophore to the SM choline headgroup without eliminating its positive charge, via a hydrophilic nonaethylene glycol linker. The new analogs behaved similarly to the native SM in terms of their partitioning behaviors in artificial liquid order-disorder phase-separated membranes and detergent-resistant PM preparations. Single fluorescent molecule tracking in the live-cell PM revealed that they indirectly interact with each other in cholesterol- and sphingosine backbone-dependent manners, and that, for ∼10-50 ms, they undergo transient colocalization-codiffusion with a glycosylphosphatidylinositol (GPI)-anchored protein, CD59 (in monomers, transient-dimer rafts, and clusters), in CD59-oligomer size-, cholesterol-, and GPI anchoring-dependent manners. These results suggest that SM continually and rapidly exchanges between CD59-associated raft domains and the bulk PM.

Indexed as

AnimalsCD59 AntigensCell LineCell MembraneCHO CellsCholesterolCricetulusDetergentsFluorescent DyesGlycosylphosphatidylinositolsHydrophobic and Hydrophilic InteractionsMembrane MicrodomainsSphingolipidsSphingomyelinsSwineCD59 AntigensCD59 protein, humanCholesterolDetergentsFluorescent DyesGlycosylphosphatidylinositolsSphingolipidsSphingomyelins

Identifiers

PMID28330937
PMCPMC5379944
OpenAlexW2600306912

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.