Evidence map›Paper›PMID 28330620›Full record

ArticleStem cell reports2017

MAD2L2 Promotes Open Chromatin in Embryonic Stem Cells and Derepresses the Dppa3 Locus.

Ali Rahjouei, Mehdi Pirouz, Michela Di Virgilio, Dirk Kamin, Michael Kessel

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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  6. REV7: Jack of many trades.Trends in cell biology · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ali RahjoueiRG Developmental Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg, 37077 Göttingen, Germany; DNA Repair and Maintenance of Genome Stability, Max-Delbruck Center for Molecular Medicine, 13125 Berlin-Buch, Germany.
Mehdi PirouzRG Developmental Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg, 37077 Göttingen, Germany.
Michela Di VirgilioDNA Repair and Maintenance of Genome Stability, Max-Delbruck Center for Molecular Medicine, 13125 Berlin-Buch, Germany.
Dirk KaminDepartment NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Am Fassberg, 37077 Göttingen, Germany.
Michael KesselRG Developmental Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg, 37077 Göttingen, Germany. Electronic address: mkessel1@gwdg.de.
Max Planck Institute for Biophysical Chemistry · DEMax Delbrück Center · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The chromatin of naive embryonic stem cells (ESCs) has a largely open configuration, as evident by the lack of condensed heterochromatin and the hypomethylation of DNA. Several molecular mechanisms promoting this constellation were previously identified. Here we present evidence for an important epigenetic function of MAD2L2, a protein originally known for its role in DNA damage repair, and for its requirement in germ cell development. We demonstrate using super-resolution microscopy that numerous MAD2L2 microfoci are exclusively associated with euchromatin, similar to other factors of the DNA damage response. In the absence of MAD2L2 the amount of heterochromatin demarcated by H3K9me2 was significantly increased. Among the most strongly suppressed genes was Dppa3, an ESC- and germ-cell-specific gene regulating DNA methylation. In Mad2l2-deficient ESCs 5-methylcytosine levels were globally increased, while several imprinted genes became hypomethylated and transcriptionally activated. Our results emphasize the important function of MAD2L2 for the open chromatin configuration of ESCs.

Indexed as

Epigenesis, GeneticAnimalsCell LineChromosomal Proteins, Non-HistoneDNA DamageDNA MethylationDown-RegulationEuchromatinGene DeletionGenetic LociHeterochromatinMad2 ProteinsMiceMouse Embryonic Stem CellsRepressor ProteinsTranscriptional ActivationChromosomal Proteins, Non-HistoneDppa3 protein, mouseEuchromatinHeterochromatinMad2l2 protein, mouseMad2 ProteinsRepressor ProteinsDNA damageDNA methylationepigeneticsgerm cellsheterochromatin

Identifiers

PMID28330620
PMCPMC5390107
OpenAlexW2595802660

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.