Evidence map›Paper›PMID 28329766›Full record

ArticleNature2017

Complex pectin metabolism by gut bacteria reveals novel catalytic functions.

Didier Ndeh, Artur Rogowski, Alan Cartmell, Ana S Luis, Arnaud Baslé, Joseph Gray, Immacolata Venditto, Jonathon Briggs, Xiaoyang Zhang, Aurore Labourel and 15 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 276 papers.

0numbers the graph read from it
0cells of the map it votes in
276citing papers in PubMed
118.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

276 citing papers in PubMed, 619 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Extracellular metabolite production byApplied and environmental microbiology · 2026
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  10. Transcriptome study ofMicrobiology spectrum · 2026
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  11. Chemoenzymatic Synthesis of AsymmetricJournal of the American Chemical Society · 2026
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  12. Article
  13. Reverse prediction of carbohydrate esterase polysaccharide targets.Biotechnology for biofuels and bioproducts · 2026
    Article
  14. Article
  15. Article
  16. Review
  17. Degradation of mucinbioRxiv : the preprint server for biology · 2026
    Article
  18. Glycan Sequencing, A Brief Primer.Glycoscience & therapy · 2026
    Article
  19. Article
  20. Article

216 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 10 institutions in 7 countries.

Didier Ndeh *Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Artur Rogowski *Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Alan Cartmell *Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Ana S Luis *Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Arnaud BasléInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Joseph GrayInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Immacolata VendittoInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Jonathon BriggsInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Xiaoyang ZhangInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Aurore LabourelInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Nicolas TerraponArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique (CNRS), Aix-Marseille University, F-13288 Marseille, France.
Fanny BuffettoINRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France.
Sergey NepogodievDepartment of Biological Chemistry, John Innes Centre Norwich Research Park, Norwich NR4 7UH, UK.
Yao XiaoDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Robert A FieldDepartment of Biological Chemistry, John Innes Centre Norwich Research Park, Norwich NR4 7UH, UK.
Yanping ZhuComplex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA.
Malcolm A O'NeilComplex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA.
Breeana R UrbanowiczComplex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA.
William S YorkComplex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA.
Gideon J DaviesDepartment of Chemistry, University of York, York YO10 5DD, U.K.
D Wade AbbottLethbridge Research Centre, Lethbridge, AB, Canada.
Marie-Christine RaletINRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France.
Eric C MartensDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Bernard HenrissatArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique (CNRS), Aix-Marseille University, F-13288 Marseille, France.
Harry J GilbertInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K.
Newcastle University · GBCarbohydrate Competence Center · NLBiopolymères Interactions Assemblages · FRNorwich Research Park · GBUniversity of Michigan–Ann Arbor · USAix-Marseille Université · FRCentre National de la Recherche Scientifique · FRLethbridge College · CAUltizyme International (Japan) · JPUniversity of Georgia · US

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/000C0618Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9790European Research Council 322820Wellcome Trust
6 · The paper itself

Abstract

The metabolism of carbohydrate polymers drives microbial diversity in the human gut microbiota. It is unclear, however, whether bacterial consortia or single organisms are required to depolymerize highly complex glycans. Here we show that the gut bacterium Bacteroides thetaiotaomicron uses the most structurally complex glycan known: the plant pectic polysaccharide rhamnogalacturonan-II, cleaving all but 1 of its 21 distinct glycosidic linkages. The deconstruction of rhamnogalacturonan-II side chains and backbone are coordinated to overcome steric constraints, and the degradation involves previously undiscovered enzyme families and catalytic activities. The degradation system informs revision of the current structural model of rhamnogalacturonan-II and highlights how individual gut bacteria orchestrate manifold enzymes to metabolize the most challenging glycan in the human diet.

Indexed as

BiocatalysisBacteroides thetaiotaomicronBoratesCatalytic DomainGastrointestinal MicrobiomeGastrointestinal TractGlycoside HydrolasesHumansModels, MolecularPectinsSubstrate SpecificityBoratesGlycoside HydrolasesPectinsrhamnogalacturonan II

Identifiers

PMID28329766
PMCPMC5388186
OpenAlexW2597428467

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.