Evidence map›Paper›PMID 28329682›Full record

ArticleCell reports2017

The SWI/SNF Protein PBRM1 Restrains VHL-Loss-Driven Clear Cell Renal Cell Carcinoma.

Amrita M Nargund, Can G Pham, Yiyu Dong, Patricia I Wang, Hatice U Osmangeyoglu, Yuchen Xie, Omer Aras, Song Han, Toshinao Oyama, Shugaku Takeda and 15 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 146 papers.

0numbers the graph read from it
0cells of the map it votes in
146citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

146 citing papers in PubMed, 218 citations in OpenAlex.

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86 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 4 institutions in 1 country.

Amrita M NargundHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Can G PhamHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Yiyu DongHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Patricia I WangHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Hatice U OsmangeyogluDepartment of Computational Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Yuchen XieHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Department of Radiology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Omer ArasGerstner Sloan Kettering School of Biomedical Sciences, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Song HanHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Toshinao OyamaHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Shugaku TakedaHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Chelsea E RayHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Zhenghong DongHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Mathieu BergeHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
A Ari HakimiDepartment of Urology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Sebastien MonetteLaboratory of Comparative Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Carl L LekayeDepartment of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Jason A KoutcherDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Christina S LeslieDepartment of Computational Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Chad J CreightonHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Nils WeinholdDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
William LeeDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Satish K TickooDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Zhong WangDepartment of Cardiac Surgery, Cardiovascular Research Center, University of Michigan, Ann Arbor, MI 48109, USA.
Emily H ChengHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. Electronic address: chenge1@mskcc.org.
James J HsiehMolecular Oncology, Department of Medicine, Siteman Cancer Center, Washington University, St. Louis, MO 63110, USA. Electronic address: jhsieh@wustl.edu.
Memorial Sloan Kettering Cancer Center · USBaylor College of Medicine · USMolecular Oncology (United States) · USUniversity of Michigan–Ann Arbor · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Epigenetic control of multipotent cardiac progenitor cell differentiationR01HL109054 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WANG, ZHONG · 2012 to 2016
$1.9M
Molecular Mechanisms of Impaired DAN Damage Response in Leukemia PathogenesisR01CA138505 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI HSIEH, JAMES J · 2013 to 2015
$1.0M
Algorithms to link signaling pathways with transcriptional programs for precision medicineK99CA207871 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI OSMANBEYOGLU, HATICE ULKU · 2016 to 2017
$270k
NCI NIH HHS K99 CA207871NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA138505NHLBI NIH HHS R01 HL109054
6 · The paper itself

Abstract

PBRM1 is the second most commonly mutated gene after VHL in clear cell renal cell carcinoma (ccRCC). However, the biological consequences of PBRM1 mutations for kidney tumorigenesis are unknown. Here, we find that kidney-specific deletion of Vhl and Pbrm1, but not either gene alone, results in bilateral, multifocal, transplantable clear cell kidney cancers. PBRM1 loss amplified the transcriptional outputs of HIF1 and STAT3 incurred by Vhl deficiency. Analysis of mouse and human ccRCC revealed convergence on mTOR activation, representing the third driver event after genetic inactivation of VHL and PBRM1. Our study reports a physiological preclinical ccRCC mouse model that recapitulates somatic mutations in human ccRCC and provides mechanistic and therapeutic insights into PBRM1 mutated subtypes of human ccRCC.

Indexed as

AnimalsCarcinoma, Renal CellDNA-Binding ProteinsDown-RegulationGene DeletionGene Expression ProfilingGene Expression Regulation, NeoplasticHMGB ProteinsHumansHydronephrosisHypoxia-Inducible Factor 1, alpha SubunitIntegrasesKidneyKidney NeoplasmsMechanistic Target of Rapamycin Complex 1MiceCre recombinaseDNA-Binding ProteinsHif1a protein, mouseHMGB ProteinsHypoxia-Inducible Factor 1, alpha SubunitIntegrasesMechanistic Target of Rapamycin Complex 1Nuclear ProteinsPBRM1 protein, humanPbrm1 protein, mouseSTAT3 Transcription FactorTranscription FactorsVHL protein, humanVHL protein, mouseVon Hippel-Lindau Tumor Suppressor ProteinccRCCepigeneticsgeneticsHIF1kidney cancermouse tumor modelMTORPBRM1STAT3VHL

Identifiers

PMID28329682
PMCPMC5431084
OpenAlexW2602238141

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.