Evidence map›Paper›PMID 28328982›Full record

ArticlePloS one2017

Highlighting of quorum sensing lux genes and their expression in the hydrothermal vent shrimp Rimicaris exoculata ectosymbiontic community. Possible use as biogeographic markers.

Simon Le Bloa, Lucile Durand, Valérie Cueff-Gauchard, Josiane Le Bars, Laure Taupin, Charlotte Marteau, Alexis Bazire, Marie-Anne Cambon-Bonavita

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Simon Le BloaIfremer, Centre Bretagne, Laboratoire de Microbiologie des Environnements Extrêmes, REM/EEP/LM2E, UMR 6197 Ifremer-CNRS-UBO, ZI Pointe du Diable, CS, Plouzané, France.
Lucile DurandIfremer, Centre Bretagne, Laboratoire de Microbiologie des Environnements Extrêmes, REM/EEP/LM2E, UMR 6197 Ifremer-CNRS-UBO, ZI Pointe du Diable, CS, Plouzané, France.
Valérie Cueff-GauchardIfremer, Centre Bretagne, Laboratoire de Microbiologie des Environnements Extrêmes, REM/EEP/LM2E, UMR 6197 Ifremer-CNRS-UBO, ZI Pointe du Diable, CS, Plouzané, France.
Josiane Le BarsIfremer, Centre Bretagne, Laboratoire de Microbiologie des Environnements Extrêmes, REM/EEP/LM2E, UMR 6197 Ifremer-CNRS-UBO, ZI Pointe du Diable, CS, Plouzané, France.
Laure TaupinUniversité de Bretagne-Sud, EA 3884, LBCM, Rue de Saint Maudé, Lorient, France.
Charlotte MarteauUniversité de Bretagne-Sud, EA 3884, LBCM, Rue de Saint Maudé, Lorient, France.
Alexis BazireUniversité de Bretagne-Sud, EA 3884, LBCM, Rue de Saint Maudé, Lorient, France.
Marie-Anne Cambon-BonavitaIfremer, Centre Bretagne, Laboratoire de Microbiologie des Environnements Extrêmes, REM/EEP/LM2E, UMR 6197 Ifremer-CNRS-UBO, ZI Pointe du Diable, CS, Plouzané, France.ORCID http://orcid.org/0000-0002-4076-0472

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rimicaris exoculata is a caridean shrimp that dominates the fauna at several hydrothermal vent sites of the Mid-Atlantic Ridge. It has two distinct and stable microbial communities. One of these epibiontic bacterial communities is located in the shrimp gut and has a distribution and role that are poorly understood. The second colonizes its enlarged gill chamber and is involved in host nutrition. It is eliminated after each molt, and has colonization processes reminiscent of those of a biofilm. The presence and expression of genes usually involved in quorum sensing (QS) were then studied. At four sites, Rainbow, TAG, Snake Pit and Logatchev, two lux genes were identified in the R. exoculata epibiontic community at different shrimp molt stages and life stages. RT-PCR experiments highlighted lux gene expression activity at TAG, Snake Pit and Rainbow vent sites. Their potential QS activity and their possible roles in epibiont colonization processes are discussed. Moreover, phylogenetic analysis has shown the presence of three clades for luxS (Epsilonproteobacteria) and four clades for luxR (Gammaproteobacteria) genes, each clade being restricted to a single site. These genes are more divergent than the 16S rRNA one. They could therefore be used as biogeographical genetic markers.

Indexed as

AnimalsDecapodaDNA, BacterialEpsilonproteobacteriaGammaproteobacteriaGenes, BacterialGenetic MarkersGillsHydrothermal VentsPhylogenyQuorum SensingRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialGenetic MarkersRNA, Ribosomal, 16S

Identifiers

PMID28328982
PMCPMC5362221

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.