Evidence map›Paper›PMID 28327996›Full record

ArticleGigaScience2017

Genome sequencing of the sweetpotato whitefly Bemisia tabaci MED/Q.

Wen Xie, Chunhai Chen, Zezhong Yang, Litao Guo, Xin Yang, Dan Wang, Ming Chen, Jinqun Huang, Yanan Wen, Yang Zeng and 33 more

Abstract read
In one paragraph

Article in GigaScience, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. The genome sequence of the Bluebell moth,Wellcome open research · 2026
    Article
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2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors.

Wen XieInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Chunhai ChenBGI-Shenzhen, Shenzhen 518083, China.
Zezhong YangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Litao GuoInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Xin YangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Dan WangBGI-Shenzhen, Shenzhen 518083, China.
Ming ChenBGI-Shenzhen, Shenzhen 518083, China.
Jinqun HuangBGI-Shenzhen, Shenzhen 518083, China.
Yanan WenInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Yang ZengInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Yating LiuInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Jixing XiaInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Lixia TianInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Hongying CuiInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Qingjun WuInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Shaoli WangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Baoyun XuInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.
Xianchun LiSchool of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.
Xinqiu TanInstitute of Plant Protection, Hunan Academy of Agricultural Sciences, Changsha 410125, China.
Murad GhanimDepartment of Entomology, Volcani Center, Bet Dagan 5025001, Israel.
Baoli QiuKey Lab of Bio-pesticide Creation and Application, South China Agricultural University, Guangzhou 510642, China.
Huipeng PanKey Lab of Bio-pesticide Creation and Application, South China Agricultural University, Guangzhou 510642, China.
Dong ChuCollege of Agronomy and Plant Protection, Qingdao Agricultural University, Qingdao 266109, China.
Helene DelatteCirad, UMR PVBMT, Saint-Pierre, La Réunion, France.
M N MaruthiNatural Resources Institute, University of Greenwich, Chatham Maritime, Kent ME4 4TB, UK.
Feng GeInstitute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Xueping ZhouInstitute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Xiaowei WangMinistry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
Fanghao WanInstitute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Yuzhou DuSchool of Horticulture and Plant Protection and Institute of Applied Entomology, Yangzhou University, Yangzhou 225009, China.
Chen LuoInstitute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China.
Fengming YanCollaborative Innovation Center of Henan Grain Crops, College of Plant Protection, Henan Agricultural University, Zhengzhou 450002, China.
Evan L PreisserDepartment of Biological Sciences, University of Rhode Island, Kingston, Rhode Island 02881, USA.
Xiaoguo JiaoCollege of Life Sciences, Hubei University, Wuhan 430062, China.
Brad S CoatesUnited States Department of Agriculture, Agricultural Research Service, Corn Insects & Crop Genetics Research Unit, Ames, IA 50011, USA.
Jinyang ZhaoBGI-Shenzhen, Shenzhen 518083, China.
Qiang GaoBGI-Shenzhen, Shenzhen 518083, China.
Jinquan XiaBGI-Shenzhen, Shenzhen 518083, China.
Ye YinBGI-Shenzhen, Shenzhen 518083, China.
Yong LiuInstitute of Plant Protection, Hunan Academy of Agricultural Sciences, Changsha 410125, China.
Judith K BrownSchool of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.
Xuguo Joe ZhouDepartment of Entomology, S-225 Agricultural Science Center North, University of Kentucky, Lexington, KY 40546-0091, USA.
Youjun ZhangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing 100081, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The sweetpotato whitefly Bemisia tabaci is a highly destructive agricultural and ornamental crop pest. It damages host plants through both phloem feeding and vectoring plant pathogens. Introductions of B. tabaci are difficult to quarantine and eradicate because of its high reproductive rates, broad host plant range, and insecticide resistance. A total of 791 Gb of raw DNA sequence from whole genome shotgun sequencing, and 13 BAC pooling libraries were generated by Illumina sequencing using different combinations of mate-pair and pair-end libraries. Assembly gave a final genome with a scaffold N50 of 437 kb, and a total length of 658 Mb. Annotation of repetitive elements and coding regions resulted in 265.0 Mb TEs (40.3%) and 20 786 protein-coding genes with putative gene family expansions, respectively. Phylogenetic analysis based on orthologs across 14 arthropod taxa suggested that MED/Q is clustered into a hemipteran clade containing A. pisum and is a sister lineage to a clade containing both R. prolixus and N. lugens. Genome completeness, as estimated using the CEGMA and Benchmarking Universal Single-Copy Orthologs pipelines, reached 96% and 79%. These MED/Q genomic resources lay a foundation for future 'pan-genomic' comparisons of invasive vs. noninvasive, invasive vs. invasive, and native vs. exotic Bemisia, which, in return, will open up new avenues of investigation into whitefly biology, evolution, and management.

Indexed as

Genome, InsectAnimalsFemaleGene LibraryHemipteraMaleSequence Analysis, DNAAnnotationAssemblyGenomicsWhitefly Bemisia tabaci

Identifiers

PMID28327996
PMCPMC5467035

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.