ArticleScientific reports2017
Candidate loci involved in domestication and improvement detected by a published 90K wheat SNP array.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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25 citing papers in PubMed.
- Candidate selective sweeps in US wheat populations.The plant genome · 2024Article
- Intra-Varietal Diversity and Its Contribution to Wheat Evolution, Domestication, and Improvement in Wheat.International journal of molecular sciences · 2023Article
- Conservatively transmitted alleles of key agronomic genes provide insights into the genetic basis of founder parents in bread wheat (Triticum aestivum L.).BMC plant biology · 2023Article
- Alleles of the GRF3-2A Gene in Wheat and Their Agronomic Value.International journal of molecular sciences · 2021Article
- Uncovering genomic regions controlling plant architectural traits in hexaploid wheat using different GWAS models.Scientific reports · 2021Article
- Genome-wide association study identifies QTL for thousand grain weight in winter wheat under normal- and late-sown stressed environments.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Transcriptome Reveals Allele Contribution to Heterosis in Maize.Frontiers in plant science · 2021Article
- Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals.Mobile DNA · 2020Article
- Selection signatures across seven decades of hard winter wheat breeding in the Great Plains of the United States.The plant genome · 2020Article
- Ecological genomics of Chinese wheat improvement: implications in breeding for adaptation.BMC plant biology · 2020Article
- Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes.BMC plant biology · 2020Article
- Dissection and validation of a QTL cluster linked to Rht-B1 locus controlling grain weight in common wheat (Triticum aestivum L.) using near-isogenic lines.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Appraising the Genetic Architecture of Kernel Traits in Hexaploid Wheat Using GWAS.International journal of molecular sciences · 2020Article
- Identification of regions under selection and loci controlling agronomic traits in a soft red winter wheat population.The plant genome · 2020Article
- Allele mining of TaGRF-2D gene 5'-UTR in Triticum aestivum and Aegilops tauschii genotypes.PloS one · 2020Article
- Architecture of Parallel Adaptation in Ten Lacustrine Threespine Stickleback Populations from the White Sea Area.Genome biology and evolution · 2019Article
- Genome-wide variation patterns between landraces and cultivars uncover divergent selection during modern wheat breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Broadening the bread wheat D genome.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Review
- Tracing the ancestry of modern bread wheats.Nature genetics · 2019Article
- TaBT1, affecting starch synthesis and thousand kernel weight, underwent strong selection during wheat improvement.Journal of experimental botany · 2019Article
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4 authors.
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Abstract
Selection is one of the most important forces in crop evolution. Common wheat is a major world food crop and a typical allopolyploid with a huge and complex genome. We applied four approaches to detect loci selected in wheat during domestication and improvement. A total of 7,984 candidate loci were detected, accounting for 23.3% of all 34,317 SNPs analysed, a much higher proportion than estimated in previous reports. We constructed a first generation wheat selection map which revealed the following new insights on genome-wide selection: (1) diversifying selection acted by increasing, decreasing or not affecting gene frequencies; (2) the number of loci under selection during domestication was much higher than that during improvement; (3) the contribution to wheat improvement by the D sub-genome was relatively small due to the bottleneck of hexaploidisation and diversity can be expanded by using synthetic wheat and introgression lines; and (4) clustered selection regions occur throughout the wheat genome, including the centromere regions. This study will not only help future wheat breeding and evolutionary studies, but will also accelerate study of other crops, especially polyploids.
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