Evidence map›Paper›PMID 28327449›Full record

ArticleMedical image analysis2017

Integrated local binary pattern texture features for classification of breast tissue imaged by optical coherence microscopy.

Sunhua Wan, Hsiang-Chieh Lee, Xiaolei Huang, Ting Xu, Tao Xu, Xianxu Zeng, Zhan Zhang, Yuri Sheikine, James L Connolly, James G Fujimoto and 1 more

Abstract read
In one paragraph

Article in Medical image analysis, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
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  10. Involvement of Machine Learning for Breast Cancer Image Classification: A Survey.Computational and mathematical methods in medicine · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Sunhua WanDepartment of Computer Science and Engineering, Lehigh University, Bethlehem, PA 18015, USA.
Hsiang-Chieh LeeDepartment of Electrical Engineering and Computer Science and Research Laboratory of Electronics, MIT, Cambridge, MA 02139, USA.
Xiaolei HuangDepartment of Computer Science and Engineering, Lehigh University, Bethlehem, PA 18015, USA. Electronic address: xih206@lehigh.edu.
Ting XuDepartment of Computer Science and Engineering, Lehigh University, Bethlehem, PA 18015, USA.
Tao XuDepartment of Electrical and Computer Engineering, Lehigh University, Bethlehem, PA 18015, USA.
Xianxu ZengDepartment of Electrical and Computer Engineering, Lehigh University, Bethlehem, PA 18015, USA; The Third Affiliated Hospital of Zhengzhou University, Henan, China.
Zhan ZhangThe Third Affiliated Hospital of Zhengzhou University, Henan, China.
Yuri SheikineDepartment of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02115, USA.
James L ConnollyDepartment of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02115, USA.
James G FujimotoDepartment of Electrical Engineering and Computer Science and Research Laboratory of Electronics, MIT, Cambridge, MA 02139, USA.
Chao ZhouDepartment of Electrical and Computer Engineering, Lehigh University, Bethlehem, PA 18015, USA; Center for Photonics and Nanoelectronics, Lehigh University, Bethlehem, PA 18015, USA; Bioengineering Program, Lehigh University, Bethlehem, PA 18015, USA. Electronic address: chaozhou@lehigh.edu.
Lehigh University · USHarvard University · USThird Affiliated Hospital of Zhengzhou University · CN

Funding

OPTICAL BIOPSY USING OPTICAL COHERENCE TOMOGRAPHYR01CA075289 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI FUJIMOTO, JAMES G, MASHIMO, HIROSHI · 1997 to 2018
$4.8M
Intraoperative real time breast cancer margin assessment with nonlinear microscopR01CA178636 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CONNOLLY, JAMES, FUJIMOTO, JAMES G · 2013 to 2018
$1.7M
Modeling and analysis of actin filament organization in yeastR01GM098430 · NIGMS · LEHIGH UNIVERSITY · PI VAVYLONIS, DIMITRIOS · 2012 to 2016
$1.3M
Integrated Optical Coherence Tomography and Microscopy for Molecular-Targeted ImaR00EB010071 · NIBIB · LEHIGH UNIVERSITY · PI ZHOU, CHAO · 2012 to 2013
$479k
Space-division multiplexing optical coherence tomography for large-scale, millisecond resolution imaging of neural activityR21EY026380 · NEI · LEHIGH UNIVERSITY · PI BERDICHEVSKY, YEVGENY, ZHOU, CHAO · 2015 to 2016
$468k
NCI NIH HHS R01 CA075289NCI NIH HHS R01 CA178636NEI NIH HHS R21 EY026380NIBIB NIH HHS R00 EB010071NIGMS NIH HHS R01 GM098430
6 · The paper itself

Abstract

This paper proposes a texture analysis technique that can effectively classify different types of human breast tissue imaged by Optical Coherence Microscopy (OCM). OCM is an emerging imaging modality for rapid tissue screening and has the potential to provide high resolution microscopic images that approach those of histology. OCM images, acquired without tissue staining, however, pose unique challenges to image analysis and pattern classification. We examined multiple types of texture features and found Local Binary Pattern (LBP) features to perform better in classifying tissues imaged by OCM. In order to improve classification accuracy, we propose novel variants of LBP features, namely average LBP (ALBP) and block based LBP (BLBP). Compared with the classic LBP feature, ALBP and BLBP features provide an enhanced encoding of the texture structure in a local neighborhood by looking at intensity differences among neighboring pixels and among certain blocks of pixels in the neighborhood. Fourty-six freshly excised human breast tissue samples, including 27 benign (e.g. fibroadenoma, fibrocystic disease and usual ductal hyperplasia) and 19 breast carcinoma (e.g. invasive ductal carcinoma, ductal carcinoma in situ and lobular carcinoma in situ) were imaged with large field OCM with an imaging area of 10 × 10 mm

Indexed as

AlgorithmsBreastBreast NeoplasmsFemaleHumansImage Processing, Computer-AssistedMicroscopy, ConfocalPattern Recognition, AutomatedReproducibility of ResultsROC CurveSensitivity and SpecificityTomography, Optical CoherenceLocal binary patternsOptical coherence microscopyTexture featuresTissue classification

Identifiers

PMID28327449
PMCPMC5479412
OpenAlexW2592062770

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.