Evidence map›Paper›PMID 28327132›Full record

ArticleBMC cancer2017

Simultaneous analysis of miRNA-mRNA in human meningiomas by integrating transcriptome: A relationship between PTX3 and miR-29c.

Altay Burak Dalan, Sukru Gulluoglu, Emre Can Tuysuz, Aysegul Kuskucu, Cumhur Kaan Yaltirik, Oguz Ozturk, Ugur Ture, Omer Faruk Bayrak

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
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  10. Non-Coding RNAs and Brain Tumors: Insights Into Their Roles in Apoptosis.Frontiers in cell and developmental biology · 2021
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  19. Unraveling the Impact ofIn vivo (Athens, Greece)
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Altay Burak DalanDepartment of Biochemistry, Yeditepe University Medical School, Istanbul, Turkey.
Sukru GulluogluDepartment of Medical Genetics, Yeditepe University Medical School, Istanbul, Turkey.
Emre Can TuysuzDepartment of Medical Genetics, Yeditepe University Medical School, Istanbul, Turkey.
Aysegul KuskucuDepartment of Medical Genetics, Yeditepe University Medical School, Istanbul, Turkey.
Cumhur Kaan YaltirikDepartment of Neurosurgery, Yeditepe University Medical School, Istanbul, Turkey.
Oguz OzturkDepartment of Molecular Medicine, Capa School of Medicine, Istanbul University, Istanbul, Turkey.
Ugur TureDepartment of Neurosurgery, Yeditepe University Medical School, Istanbul, Turkey.
Omer Faruk BayrakDepartment of Medical Genetics, Yeditepe University Medical School, Istanbul, Turkey. ofbayrak@yeditepe.edu.tr.
Yeditepe University · TRIstanbul University · TRYeditepe University Hospital · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlthough meningioma is a common disease, there is a lack of understanding of the underlying molecular mechanisms behind its initiation and progression. We used combined miRNA-mRNA transcriptome analysis to discover dysregulated genes and networks in meningiomas.

methodsFourteen fresh-frozen meningioma samples and one human meningeal cell line were analyzed by using miRNA and whole transcriptome microarray chips. Data was filtered and analyzed. Candidate miRNAs and mRNAs were selected for validation in fifty-eight patient samples. miRNA and target mRNA relationships were assessed by inhibiting miRNA in meningioma cells. Apoptosis and viability assays were also used as functional tests.

resultsWith the whole transcriptome microarray, 3753 genes were found to be dysregulated, and 891 miRNAs were found to be dysregulated as a result of miRNA microarray. Results were combined and analyzed with bioinformatics tools. Top differential pathways included those of inflammation, cancer, and cellular growth and survival. The oncosupressor PTX3 was constitutively low in meningioma samples. Moreover, PTX3 negatively correlated with miR-29c in our samples. Inhibiting miR-29c upregulated the PTX3 level, induced apoptosis of meningioma cells, and decreased cell viability. CABIN1, miR-29c, TMOD1, PTX3, RPL22, SPARCL1 and RELA were correlated with clinicopathological features in patient samples.

conclusionsOur results present the first integrated mRNA-miRNA analysis in meningiomas. miR-29c-3p and PTX3 are inversely correlated in tissues and meningioma cells, hinting that PTX3 can be regulated by miR-29c-3p. Furthermore, we determined potential clinicopathological markers.

Indexed as

ApoptosisBiomarkers, TumorCell Line, TumorCell SurvivalComputational BiologyC-Reactive ProteinGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansMeningeal NeoplasmsMeningiomaMicroRNAsPentraxinsRNA, MessengerSerum Amyloid P-ComponentBiomarkers, TumorC-Reactive ProteinMicroRNAsMIRN29a microRNA, humanPentraxinsRNA, MessengerSerum Amyloid P-ComponentmeningiomamicroarraymiR-29cmiRNAPTX3transcriptome

Identifiers

PMID28327132
PMCPMC5361823
OpenAlexW2603230398

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.