Evidence map›Paper›PMID 28325759›Full record

ArticleJournal of cell science2017

Predicting the targeting of tail-anchored proteins to subcellular compartments in mammalian cells.

Joseph L Costello, Inês G Castro, Fátima Camões, Tina A Schrader, Doug McNeall, Jing Yang, Evdokia-Anastasia Giannopoulou, Sílvia Gomes, Vivian Pogenberg, Nina A Bonekamp and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of cell science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 119 citations in OpenAlex.

  1. Review
  2. GET3 regulates apoptosis via tail-anchoring of MCL1.Cell death and differentiation · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. The peroxisome: an update on mysteries 3.0.Histochemistry and cell biology · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. The Endoplasmic Reticulum and the Fidelity of Nascent Protein Localization.Cold Spring Harbor perspectives in biology · 2023
    Review
  18. Article
  19. Assessing Peroxisomal Protein Interaction by Immunoprecipitation.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 4 countries.

Joseph L CostelloBiosciences, University of Exeter, Exeter EX4 4QD, UK.
Inês G CastroBiosciences, University of Exeter, Exeter EX4 4QD, UK.
Fátima CamõesCentre for Cell Biology/Institute of Biomedicine & Department of Biology, University of Aveiro, Aveiro 3810-193, Portugal.
Tina A SchraderBiosciences, University of Exeter, Exeter EX4 4QD, UK.
Doug McNeallMet Office Hadley Centre, Exeter EX1 3PB, UK.
Jing YangTemasek Life Sciences Laboratory, Department of Biological Sciences, National University of Singapore, Singapore.
Evdokia-Anastasia GiannopoulouEMBL Hamburg, c/o DESY, Hamburg 22603, Germany.
Sílvia GomesCentre for Cell Biology/Institute of Biomedicine & Department of Biology, University of Aveiro, Aveiro 3810-193, Portugal.ORCID 0000-0001-8473-4420
Vivian PogenbergEMBL Hamburg, c/o DESY, Hamburg 22603, Germany.
Nina A BonekampCentre for Cell Biology/Institute of Biomedicine & Department of Biology, University of Aveiro, Aveiro 3810-193, Portugal.
Daniela RibeiroCentre for Cell Biology/Institute of Biomedicine & Department of Biology, University of Aveiro, Aveiro 3810-193, Portugal.
Matthias WilmannsEMBL Hamburg, c/o DESY, Hamburg 22603, Germany.
Gregory JeddTemasek Life Sciences Laboratory, Department of Biological Sciences, National University of Singapore, Singapore.
Markus IslingerInstitute of Neuroanatomy, Center for Biomedicine and Medical Technology Mannheim, University of Heidelberg, Mannheim 68167, Germany Markus.Islinger@medma.uni-heidelberg.de M.Schrader@exeter.ac.uk.
Michael SchraderBiosciences, University of Exeter, Exeter EX4 4QD, UK Markus.Islinger@medma.uni-heidelberg.de M.Schrader@exeter.ac.uk.ORCID 0000-0003-2146-0535
University of Aveiro · PTUniversity of Exeter · GBEuropean Molecular Biology Laboratory · DETemasek Life Sciences Laboratory · SGHeidelberg University · DEMet Office · GB

Funding

Biotechnology and Biological Sciences Research Council BB/K006231/1Biotechnology and Biological Sciences Research Council BB/N01541X/1Wellcome TrustWellcome Trust WT097835MFWellcome Trust WT105618MA
6 · The paper itself

Abstract

Tail-anchored (TA) proteins contain a single transmembrane domain (TMD) at the C-terminus that anchors them to the membranes of organelles where they mediate critical cellular processes. Accordingly, mutations in genes encoding TA proteins have been identified in a number of severe inherited disorders. Despite the importance of correctly targeting a TA protein to its appropriate membrane, the mechanisms and signals involved are not fully understood. In this study, we identify additional peroxisomal TA proteins, discover more proteins that are present on multiple organelles, and reveal that a combination of TMD hydrophobicity and tail charge determines targeting to distinct organelle locations in mammals. Specifically, an increase in tail charge can override a hydrophobic TMD signal and re-direct a protein from the ER to peroxisomes or mitochondria and vice versa. We show that subtle changes in those parameters can shift TA proteins between organelles, explaining why peroxisomes and mitochondria have many of the same TA proteins. This enabled us to associate characteristic physicochemical parameters in TA proteins with particular organelle groups. Using this classification allowed successful prediction of the location of uncharacterized TA proteins for the first time.

Indexed as

Cell CompartmentationAnimalsEndoplasmic ReticulumHep G2 CellsHumansHydrophobic and Hydrophilic InteractionsIntracellular MembranesMammalsMembrane ProteinsMitochondriaModels, BiologicalPeroxisomesProtein TransportSaccharomyces cerevisiaeSubcellular FractionsMembrane ProteinsACBD5MitochondriaPeroxisomesTail-anchored protein

Identifiers

PMID28325759
PMCPMC5450235
OpenAlexW2599005405

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.