Evidence map›Paper›PMID 28323402›Full record

ArticleACS chemical biology2017

Single Particle Observation of SV40 VP1 Polyanion-Induced Assembly Shows That Substrate Size and Structure Modulate Capsid Geometry.

Chenglei Li, Andrew R Kneller, Stephen C Jacobson, Adam Zlotnick

Abstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
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  12. Length of encapsidated cargo impacts stability and structure of in vitro assembled alphavirus core-like particles.Journal of physics. Condensed matter : an Institute of Physics journal · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Chenglei LiDepartment of Molecular and Cellular Biochemistry and ‡Department of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.
Andrew R KnellerDepartment of Molecular and Cellular Biochemistry and ‡Department of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.
Stephen C JacobsonDepartment of Molecular and Cellular Biochemistry and ‡Department of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.ORCID 0000-0003-2415-041X
Adam ZlotnickDepartment of Molecular and Cellular Biochemistry and ‡Department of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.ORCID 0000-0001-9945-6267

Funding

Assembly of a Dodecahedral VirusR03AI102873 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI ZLOTNICK, ADAM · 2013 to 2014
$139k
NIAID NIH HHS R03 AI102873
6 · The paper itself

Abstract

Simian virus 40 capsid protein (VP1) is a unique system for studying substrate-dependent assembly of a nanoparticle. Here, we investigate a simplest case of this system where 12 VP1 pentamers and a single polyanion, e.g., RNA, form a T = 1 particle. To test the roles of polyanion substrate length and structure during assembly, we characterized the assembly products with size exclusion chromatography, transmission electron microscopy, and single-particle resistive-pulse sensing. We found that 500 and 600 nt RNAs had the optimal length and structure for assembly of uniform T = 1 particles. Longer 800 nt RNA, shorter 300 nt RNA, and a linear 600 unit poly(styrene sulfonate) (PSS) polyelectrolyte produced heterogeneous populations of products. This result was surprising as the 600mer PSS and 500-600 nt RNA have similar mass and charge. Like ssRNA, PSS also has a short 4 nm persistence length, but unlike RNA, PSS lacks a compact tertiary structure. These data indicate that even for flexible substrates, shape as well as size affect assembly and are consistent with the hypothesis that work, derived from protein-protein and protein-substrate interactions, is used to compact the substrate.

Indexed as

Virus AssemblyCapsidCapsid ProteinsPolyelectrolytesPolymerizationPolymersPolystyrenesRNASimian virus 40Capsid ProteinsPolyelectrolytesPolymersPolystyrenespolystyrene sulfonic acidRNAVP1 protein, polyomavirus

Identifiers

PMID28323402
PMCPMC5502116

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.