Evidence map›Paper›PMID 28322723›Full record

ArticleeLife2017

Nucleosomes influence multiple steps during replication initiation.

Ishara F Azmi, Shinya Watanabe, Michael F Maloney, Sukhyun Kang, Jason A Belsky, David M MacAlpine, Craig L Peterson, Stephen P Bell

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
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  4. Chromatin architecture sets origin licensing capacity.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Ishara F AzmiDepartment of Biology, Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, United States.ORCID 0000-0001-6280-3149
Shinya WatanabeProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, United States.
Michael F MaloneyDepartment of Biology, Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, United States.
Sukhyun KangDepartment of Biology, Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, United States.
Jason A BelskyDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, United States.ORCID 0000-0003-2945-6282
David M MacAlpineDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, United States.
Craig L PetersonProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, United States.
Stephen P BellDepartment of Biology, Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, United States.ORCID 0000-0002-2876-610X
Howard Hughes Medical Institute · USUniversity of Massachusetts Chan Medical School · USDuke Medical Center · USDuke University · US

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI MATTHEW G. VANDER HEIDEN · 1985 to 2026
$93.9M
Regulation of chromatin dynamicsR35GM122519 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Craig L Peterson · 2017 to 2026
$9.2M
YEAST CHROMATIN STRUCTURE/FUNCTIONR01GM054096 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI PETERSON, CRAIG L · 1997 to 2017
$5.7M
Computational Biology and Bioinformatics Training ProgramT32GM071340 · NIGMS · DUKE UNIVERSITY · PI MAGWENE, PAUL MITAARI · 2005 to 2020
$3.3M
Chromatin architecture defines DNA replication originsR01GM104097 · NIGMS · DUKE UNIVERSITY · PI MACALPINE, DAVID M · 2013 to 2016
$1.2M
NCI NIH HHS P30 CA014051NIGMS NIH HHS R01 GM054096NIGMS NIH HHS R01 GM104097NIGMS NIH HHS R35 GM122519NIGMS NIH HHS T32 GM071340
6 · The paper itself

Abstract

Eukaryotic replication origin licensing, activation and timing are influenced by chromatin but a mechanistic understanding is lacking. Using reconstituted nucleosomal DNA replication assays, we assessed the impact of nucleosomes on replication initiation. To generate distinct nucleosomal landscapes, different chromatin-remodeling enzymes (CREs) were used to remodel nucleosomes on origin-DNA templates. Nucleosomal organization influenced two steps of replication initiation: origin licensing and helicase activation. Origin licensing assays showed that local nucleosome positioning enhanced origin specificity and modulated helicase loading by influencing ORC DNA binding. Interestingly, SWI/SNF- and RSC-remodeled nucleosomes were permissive for origin licensing but showed reduced helicase activation. Specific CREs rescued replication of these templates if added prior to helicase activation, indicating a permissive chromatin state must be established during origin licensing to allow efficient origin activation. Our studies show nucleosomes directly modulate origin licensing and activation through distinct mechanisms and provide insights into the regulation of replication initiation by chromatin.

Indexed as

DNA ReplicationReplication OriginDNADNA HelicasesNucleosomesProtein BindingSaccharomyces cerevisiaeDNADNA HelicasesNucleosomesbiochemistrychromatin remodeling enzymechromosomesDNA ReplicationEukaryoticgenesHelicasenucleosomeorigin licensingS. cerevisiae

Identifiers

PMID28322723
PMCPMC5400510
OpenAlexW2598480796

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.