Evidence map›Paper›PMID 28321931›Full record

ArticleThe Plant journal : for cell and molecular biology2017

Disruptions in valine degradation affect seed development and germination in Arabidopsis.

Andrew B Gipson, Kyla J Morton, Rachel J Rhee, Szabolcs Simo, Jack A Clayton, Morgan E Perrett, Christiana G Binkley, Erika L Jensen, Dana L Oakes, Matthew F Rouhier and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Redox dynamics in seeds ofFrontiers in plant science · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Genome-wide association study reveals that GhTRL1 and GhPIN8 affect cotton root development.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  16. Overview of Allelopathic Potential ofMolecules (Basel, Switzerland) · 2022
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Andrew B GipsonKenyon College, 200 N. College Rd, Gambier, OH, 43022, USA.
Kyla J MortonDoan University, 1014 Boswell Ave, Crete, NE, 68333, USA.
Rachel J RheeKenyon College, 200 N. College Rd, Gambier, OH, 43022, USA.
Szabolcs SimoKenyon College, 200 N. College Rd, Gambier, OH, 43022, USA.
Jack A ClaytonKenyon College, 200 N. College Rd, Gambier, OH, 43022, USA.
Morgan E PerrettKenyon College, 200 N. College Rd, Gambier, OH, 43022, USA.
Christiana G BinkleyKenyon College, 200 N. College Rd, Gambier, OH, 43022, USA.
Erika L JensenKenyon College, 200 N. College Rd, Gambier, OH, 43022, USA.
Dana L OakesKenyon College, 200 N. College Rd, Gambier, OH, 43022, USA.
Matthew F RouhierKenyon College, 200 N. College Rd, Gambier, OH, 43022, USA.
Kerry A RouhierKenyon College, 200 N. College Rd, Gambier, OH, 43022, USA.
Kenyon College · USKean University · US

Funding

UNMC Structural Biology CoreP20GM103427 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Heather Colleen Jensen-Smith · 2012 to 2026
$59.2M
NIGMS NIH HHS P20 GM103427
6 · The paper itself

Abstract

We have functionally characterized the role of two putative mitochondrial enzymes in valine degradation using insertional mutants. Prior to this study, the relationship between branched-chain amino acid degradation (named for leucine, valine and isoleucine) and seed development was limited to leucine catabolism. Using a reverse genetics approach, we show that disruptions in the mitochondrial valine degradation pathway affect seed development and germination in Arabidopsis thaliana. A null mutant of 3-hydroxyisobutyryl-CoA hydrolase (CHY4, At4g31810) resulted in an embryo lethal phenotype, while a null mutant of methylmalonate semialdehyde dehydrogenase (MMSD, At2g14170) resulted in seeds with wrinkled coats, decreased storage reserves, elevated valine and leucine, and reduced germination rates. These data highlight the unique contributions CHY4 and MMSD make to the overall growth and viability of plants. It also increases our knowledge of the role branched-chain amino acid catabolism plays in seed development and amino acid homeostasis.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantGerminationPlants, Genetically ModifiedSeedsValineArabidopsis ProteinsValineArabidopsisdevelopmentembryo lethalseedvaline catabolism

Identifiers

PMID28321931
PMCPMC5461199
OpenAlexW2600504122

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.