ArticleRice (New York, N.Y.)2017
Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm.
Article in Rice (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 75 citations in OpenAlex.
- The Roles of MicroRNAs in the Regulation of Rice-Pathogen Interactions.Plants (Basel, Switzerland) · 2025Review
- Unraveling the genetic and molecular bases of heterosis in a TGMS-based two-line rice hybrid derived FFrontiers in plant science · 2025Article
- Development of Novel KASP Markers for Improved Germination in Deep-Sown Direct Seeded Rice.Rice (New York, N.Y.) · 2024Article
- Defining genomic landscape for identification of potential candidate resistance genes associated with major rice diseases through MetaQTL analysis.Journal of biosciences · 2024Article
- Superior haplotypes towards the development of blast and bacterial blight-resistant rice.Frontiers in plant science · 2024Article
- Genome-Wide Association Study Identifies Resistance Loci for Bacterial Blight in a Collection of Asian TemperateInternational journal of molecular sciences · 2023Article
- Evaluation of nine statistics to identify QTLs in bulk segregant analysis using next generation sequencing approaches.BMC genomics · 2022Article
- Two decades of association mapping: Insights on disease resistance in major crops.Frontiers in plant science · 2022Review
- Inducible Enrichment of Osa-miR1432 Confers Rice Bacterial Blight Resistance through SuppressingInternational journal of molecular sciences · 2021Article
- Applying HPLC to Screening QTLs for BLB Resistance in Rice.Plants (Basel, Switzerland) · 2021Article
- Genome-Wide Association Study of QTLs Conferring Resistance to Bacterial Leaf Streak in Rice.Plants (Basel, Switzerland) · 2021Article
- Spatial kernel models capturing field heterogeneity for accurate estimation of genetic potential.Breeding science · 2021Article
- Identification of rice (Oryza sativa L.) genes involved in sheath blight resistance via a genome-wide association study.Plant biotechnology journal · 2021Article
- Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice.Rice (New York, N.Y.) · 2021Article
- Single nucleotide polymorphisms reveal genetic diversity in New Mexican chile peppers (Capsicum spp.).BMC genomics · 2021Article
- Genome-wide association mapping for resistance to bacterial blight and bacterial leaf streak in rice.Planta · 2021Article
- Identification of Bacterial Blight Resistance Loci in Rice (Plants (Basel, Switzerland) · 2021Article
- Genomics-assisted breeding for successful development of multiple-stress-tolerant, climate-smart rice for southern and southeastern Asia.The plant genome · 2021Article
- Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project.Rice (New York, N.Y.) · 2021Article
- Genome-Wide Association Analysis Identifies Resistance Loci for Bacterial Leaf Streak Resistance in Rice (Plants (Basel, Switzerland) · 2020Article
Corrections and comments
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Authors and funding
13 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundA range of resistance loci against different races of Xanthomonas oryzae pv. oryzae (Xoo), the pathogen causing bacterial blight (BB) disease of rice, have been discovered and characterized. Several have been deployed in modern varieties, however, due to rapid evolution of Xoo, a number have already become ineffective. The continuous "arms race" between Xoo and rice makes it imperative to discover new resistance loci to enable durable deployment of multiple resistance genes in modern breeding lines. Rice diversity panels can be exploited as reservoirs of useful genetic variation for bacterial blight (BB) resistance. This study was conducted to identify loci associated to BB resistance, new genetic donors and useful molecular markers for marker-assisted breeding.
resultsA genome-wide association study (GWAS) of BB resistance using a diverse panel of 285 rice accessions was performed to identify loci that are associated with resistance to nine Xoo strains from the Philippines, representative of eight global races. Single nucleotide polymorphisms (SNPs) associated with differential resistance were identified in the diverse panel and a subset of 198 indica accessions. Strong associations were found for novel SNPs linked with known bacterial blight resistance Xa genes, from which high utility markers for tracking and selection of resistance genes in breeding programs were designed. Furthermore, significant associations of SNPs in chromosomes 6, 9, 11, and 12 did not overlap with known resistance loci and hence might prove to be novel sources of resistance. Detailed analysis revealed haplotypes that correlated with resistance and analysis of putative resistance alleles identified resistant genotypes as potential donors of new resistance genes.
conclusionsThe results of the GWAS validated known genes underlying resistance and identified novel loci that provide useful targets for further investigation. SNP markers and genetic donors identified in this study will help plant breeders in improving and diversifying resistance to BB.
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