Evidence map›Paper›PMID 28320972›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Sensing relative signal in the Tgf-β/Smad pathway.

Christopher L Frick, Clare Yarka, Harry Nunns, Lea Goentoro

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. Review
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  10. Phenotypic consequences of logarithmic signaling in MAPK stress response.bioRxiv : the preprint server for biology · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Input integration by the circadian clock exhibits nonadditivity and fold-change detection.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Article
  17. Molecular Characterization, Expression Profiles ofAnimals : an open access journal from MDPI · 2022
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Christopher L FrickDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125 goentoro@caltech.edu cfrick@caltech.edu.
Clare YarkaDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125.
Harry NunnsDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125.
Lea GoentoroDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125 goentoro@caltech.edu cfrick@caltech.edu.

Funding

PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
Relative perception in Wnt signalingDP2OD008471 · OD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI GOENTORO, LEA · 2011 to 2011
$2.5M
NIGMS NIH HHS T32 GM007616NIH HHS DP2 OD008471
6 · The paper itself

Abstract

How signaling pathways function reliably despite cellular variation remains a question in many systems. In the transforming growth factor-β (Tgf-β) pathway, exposure to ligand stimulates nuclear localization of Smad proteins, which then regulate target gene expression. Examining Smad3 dynamics in live reporter cells, we found evidence for fold-change detection. Although the level of nuclear Smad3 varied across cells, the fold change in the level of nuclear Smad3 was a more precise outcome of ligand stimulation. The precision of the fold-change response was observed throughout the signaling duration and across Tgf-β doses, and significantly increased the information transduction capacity of the pathway. Using single-molecule FISH, we further observed that expression of Smad3 target genes (

Indexed as

Cell LineCell NucleusConnective Tissue Growth FactorDose-Response Relationship, DrugGene Expression RegulationHumansIn Situ Hybridization, FluorescencePhosphorylationRecombinant ProteinsSignal TransductionSingle-Cell AnalysisSmad2 ProteinSmad3 ProteinSmad ProteinsTransforming Growth Factor betaTransforming Growth Factor beta1CCN2 protein, humanConnective Tissue Growth FactorRecombinant ProteinsSmad2 ProteinSMAD2 protein, humanSmad3 ProteinSMAD3 protein, humanSmad ProteinsTransforming Growth Factor betaTransforming Growth Factor beta1fold-change detectioninformationsignal transductionSmadTgf-β

Identifiers

PMID28320972
PMCPMC5389321

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.