Evidence map›Paper›PMID 28320961›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Structure of a headful DNA-packaging bacterial virus at 2.9 Å resolution by electron cryo-microscopy.

Haiyan Zhao, Kunpeng Li, Anna Y Lynn, Keith E Aron, Guimei Yu, Wen Jiang, Liang Tang

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. A Capsid Structure ofViruses · 2022
    Article
  7. Polymorphism in peptide self-assembly visualized.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Capsid Structure ofJournal of virology · 2021
    Article
  9. High Resolution Structure of the Mature Capsid ofInternational journal of molecular sciences · 2021
    Article
  10. High resolution single particle Cryo-EM refinement using JSPR.Progress in biophysics and molecular biology · 2021
    Review
  11. Article
  12. Ecology, Structure, and Evolution ofAnnual review of virology · 2020
    Review
  13. Capsid expansion of bacteriophage T5 revealed by high resolution cryoelectron microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Atomic cryo-EM structures of viruses.Current opinion in structural biology · 2017
    Review
  18. Article
  19. Analysis of β-strand Twist from the 3-dimensional Image of a Protein.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Haiyan ZhaoDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045.
Kunpeng LiDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.
Anna Y LynnDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045.
Keith E AronDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045.
Guimei YuDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.
Wen JiangDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907 jiang12@purdue.edu tangl@ku.edu.
Liang TangDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045; jiang12@purdue.edu tangl@ku.edu.

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SUSAN J. BROWN · 2012 to 2026
$63.0M
HBGA receptors in host cell entry and infection of norovirusR01AI111095 · NIAID · PURDUE UNIVERSITY · PI JIANG, WEN, JIANG, XI · 2015 to 2019
$2.5M
Genome packaging in DNA virusesR01GM090010 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI TANG, LIANG · 2010 to 2014
$1.3M
NIAID NIH HHS R01 AI111095NIGMS NIH HHS P20 GM103418NIGMS NIH HHS R01 GM090010
6 · The paper itself

Abstract

The enormous prevalence of tailed DNA bacteriophages on this planet is enabled by highly efficient self-assembly of hundreds of protein subunits into highly stable capsids. These capsids can stand with an internal pressure as high as ∼50 atmospheres as a result of the phage DNA-packaging process. Here we report the complete atomic model of the headful DNA-packaging bacteriophage Sf6 at 2.9 Å resolution determined by electron cryo-microscopy. The structure reveals the DNA-inflated, tensed state of a robust protein shell assembled via noncovalent interactions. Remarkable global conformational polymorphism of capsid proteins, a network formed by extended N arms, mortise-and-tenon-like intercapsomer joints, and abundant β-sheet-like mainchain:mainchain intermolecular interactions, confers significant strength yet also flexibility required for capsid assembly and DNA packaging. Differential formations of the hexon and penton are mediated by a drastic α-helix-to-β-strand structural transition. The assembly scheme revealed here may be common among tailed DNA phages and herpesviruses.

Indexed as

BacteriophagesCapsidCapsid ProteinsCryoelectron MicroscopyCrystallography, X-RayDNA PackagingModels, MolecularProtein Structure, SecondaryVirus AssemblyCapsid Proteinsatomic structurebacteriophagecryoEMDNA packagingvirus assembly

Identifiers

PMID28320961
PMCPMC5389284

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.