Evidence map›Paper›PMID 28320772›Full record

ArticleMolecular systems biology2017

Mechanism for microbial population collapse in a fluctuating resource environment.

Serdar Turkarslan, Arjun V Raman, Anne W Thompson, Christina E Arens, Mark A Gillespie, Frederick von Netzer, Kristina L Hillesland, Sergey Stolyar, Adrian López García de Lomana, David J Reiss and 6 more

Abstract read
In one paragraph

Article in Molecular systems biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Serdar TurkarslanInstitute for Systems Biology, Seattle, WA, USA.ORCID 0000-0003-1679-6405
Arjun V RamanInstitute for Systems Biology, Seattle, WA, USA.
Anne W ThompsonInstitute for Systems Biology, Seattle, WA, USA.
Christina E ArensInstitute for Systems Biology, Seattle, WA, USA.
Mark A GillespieInstitute for Systems Biology, Seattle, WA, USA.
Frederick von NetzerCivil and Environmental Engineering, University of Washington, Seattle, WA, USA.
Kristina L HilleslandBiological Sciences, University of Washington Bothell, Bothell, WA, USA.
Sergey StolyarInstitute for Systems Biology, Seattle, WA, USA.
Adrian López García de LomanaInstitute for Systems Biology, Seattle, WA, USA.
David J ReissInstitute for Systems Biology, Seattle, WA, USA.
Drew Gorman-LewisEarth and Space Sciences, University of Washington, Seattle, WA, USA.
Grant M ZaneDepartment of Biochemistry, University of Missouri, Columbia, MO, USA.
Jeffrey A RanishInstitute for Systems Biology, Seattle, WA, USA.
Judy D WallDepartment of Biochemistry, University of Missouri, Columbia, MO, USA.
David A StahlCivil and Environmental Engineering, University of Washington, Seattle, WA, USA.
Nitin S BaligaInstitute for Systems Biology, Seattle, WA, USA nbaliga@systemsbiology.org.ORCID 0000-0001-9157-5974

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
NIGMS NIH HHS P50 GM076547
6 · The paper itself

Abstract

Managing trade-offs through gene regulation is believed to confer resilience to a microbial community in a fluctuating resource environment. To investigate this hypothesis, we imposed a fluctuating environment that required the sulfate-reducer

Indexed as

Desulfovibrio vulgarisDirected Molecular EvolutionGene Expression ProfilingMethanococcusOxidation-ReductionPhenotypeProteomicsSequence Analysis, RNASingle-Cell AnalysisSulfatesSystems BiologySulfatesfluctuating resource environmentmicrobial population collapseregulationresiliencesyntrophy

Identifiers

PMID28320772
PMCPMC5371734

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.