Evidence map›Paper›PMID 28319136›Full record

ArticlePloS one2017

Structural insights into the regulation of Bacillus subtilis SigW activity by anti-sigma RsiW.

Shankar Raj Devkota, Eunju Kwon, Sung Chul Ha, Hyeun Wook Chang, Dong Young Kim

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Discovery of Novel c-di-GMP-Related Genes inPathogens (Basel, Switzerland) · 2026
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  5. Structural Analysis ofMicroorganisms · 2023
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  7. Cell Envelope Stress Response in Pseudomonas aeruginosa.Advances in experimental medicine and biology · 2022
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  8. Review
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  11. Autonomous and Assisted Control for Synthetic Microbiology.International journal of molecular sciences · 2020
    Review
  12. Article
  13. Review
  14. The pneumococcal σThe Journal of biological chemistry · 2019
    Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shankar Raj DevkotaCollege of Pharmacy, Yeungnam University, Gyeongsan, Gyeongbuk, South Korea.
Eunju KwonCollege of Pharmacy, Yeungnam University, Gyeongsan, Gyeongbuk, South Korea.
Sung Chul HaPohang Accelerator Laboratory, Pohang University of Science and Technology, Pohang, Gyeongbuk, South Korea.
Hyeun Wook ChangCollege of Pharmacy, Yeungnam University, Gyeongsan, Gyeongbuk, South Korea.
Dong Young KimCollege of Pharmacy, Yeungnam University, Gyeongsan, Gyeongbuk, South Korea.ORCID http://orcid.org/0000-0001-7594-9083

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus subtilis SigW is localized to the cell membrane and is inactivated by the tight interaction with anti-sigma RsiW under normal growth conditions. Whereas SigW is discharged from RsiW binding and thus initiates the transcription of its regulon under diverse stress conditions such as antibiotics and alkaline shock. The release and activation of SigW in response to extracytoplasmic signals is induced by the regulated intramembrane proteolysis of RsiW. As a ZAS (Zinc-containing anti-sigma) family protein, RsiW has a CHCC zinc binding motif, which implies that its anti-sigma activity may be regulated by the state of zinc coordination in addition to the proteolytic cleavage of RsiW. To understand the regulation mode of SigW activity by RsiW, we determined the crystal structures of SigW in complex with the cytoplasmic domain of RsiW, and compared the conformation of the CHCC motif in the reduced/zinc binding and the oxidized states. The structures revealed that RsiW inhibits the promoter binding of SigW by interacting with the surface groove of SigW. The interaction between SigW and RsiW is not disrupted by the oxidation of the CHCC motif in RsiW, suggesting that SigW activity might not be regulated by the zinc coordination states of the CHCC motif.

Indexed as

Amino Acid SequenceBacillus subtilisBacterial ProteinsChromatography, GelEscherichia coliLasersLightModels, MolecularOxidation-ReductionPromoter Regions, GeneticProtein BindingProtein DomainsRecombinant ProteinsScattering, RadiationSigma FactorZincBacterial ProteinsRecombinant ProteinsSigma FactorSigW protein, Bacillus subtilisZinc

Identifiers

PMID28319136
PMCPMC5358783

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.