Evidence map›Paper›PMID 28319092›Full record

ArticleNature cell biology2017

The TDH-GCN5L1-Fbxo15-KBP axis limits mitochondrial biogenesis in mouse embryonic stem cells.

Valerio Donato, Massimo Bonora, Daniele Simoneschi, Davide Sartini, Yasusei Kudo, Anita Saraf, Laurence Florens, Michael P Washburn, Matthias Stadtfeld, Paolo Pinton and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 81 citations in OpenAlex.

  1. BLOC1S1 regulates autolysosomal and exosomal dynamics during CD4bioRxiv : the preprint server for biology · 2026
    Article
  2. BLOC1S1 depletion via splice-switching oligonucleotides improves mitochondrial respiration and rescues ALS phenotypes.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
    Article
  3. Review
  4. Article
  5. Integrative Transcriptomic and Proteomic Analysis RevealsAnimals : an open access journal from MDPI · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. F-box only protein 9 and its role in cancer.Molecular biology reports · 2022
    Review
  12. Article
  13. Article
  14. CRL4Nature · 2021
    Article
  15. Review
  16. The emerging roles of GCN5L1 in mitochondrial and vacuolar organelle biology.Biochimica et biophysica acta. Gene regulatory mechanisms · 2021
    Review
  17. Article
  18. Article
  19. Mitochondrial plasticity in cell fate regulation.The Journal of biological chemistry · 2019
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Valerio DonatoDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, 522 First Avenue, SRB 1107, New York, New York 10016, USA.
Massimo BonoraDepartment of Morphology, Surgery and Experimental Medicine, University of Ferrara, Via Fossato di Mortara 70, Ferrara 44121, Italy.
Daniele SimoneschiDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, 522 First Avenue, SRB 1107, New York, New York 10016, USA.
Davide SartiniDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, 522 First Avenue, SRB 1107, New York, New York 10016, USA.
Yasusei KudoDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, 522 First Avenue, SRB 1107, New York, New York 10016, USA.ORCID 0000-0002-0392-7720
Anita SarafThe Stowers Institute for Medical Research, 1000 East 50th Street, Kansas City, Missouri 64110, USA.
Laurence FlorensThe Stowers Institute for Medical Research, 1000 East 50th Street, Kansas City, Missouri 64110, USA.
Michael P WashburnThe Stowers Institute for Medical Research, 1000 East 50th Street, Kansas City, Missouri 64110, USA.ORCID 0000-0001-7568-2585
Matthias StadtfeldSkirball Institute of Biomolecular Medicine and Helen L. and Martin S. Kimmel Center for Biology and Medicine, New York University School of Medicine, 522 First Avenue, New York, New York 10016, USA.
Paolo PintonDepartment of Morphology, Surgery and Experimental Medicine, University of Ferrara, Via Fossato di Mortara 70, Ferrara 44121, Italy.
Michele PaganoDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, 522 First Avenue, SRB 1107, New York, New York 10016, USA.
New York University · USStowers Institute for Medical Research · USHoward Hughes Medical Institute · USUniversity of Ferrara · IT

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Drew R Jones · 1985 to 2026
$83.1M
TRAINING PROGRAM IN MOLECULAR ONCOLOGY &IMMUNOLOGYT32CA009161 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CARROLL, WILLIAM L., LEVY, DAVID E · 1985 to 2020
$13.3M
REGULATION OF THE GI PHASE BY THE UBIQUITIN PATHWAYR01GM057587 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PAGANO, MICHELE · 1998 to 2018
$7.8M
F-box proteins: deregulated cell cycle control and proteolysis in cancerR37CA076584 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PAGANO, MICHELE · 2006 to 2016
$4.7M
F-Box Proteins: Deregulated Cell Cycle Control and Proteolysis in CancerR01CA076584 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PAGANO, MICHELE · 1998 to 2021
$4.5M
Maintenance of epigenetic integrity during nuclear reprogrammingR01GM111852 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI STADTFELD, MATTHIAS · 2014 to 2018
$1.6M
Regulating centrosome homeostasis through the UPSR21CA202200 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PAGANO, MICHELE · 2016 to 2017
$406k
Role of the SCF/Fbxo15 ubiquitin ligase in stem cells and cancer biologyR21CA161108 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PAGANO, MICHELE · 2011 to 2012
$404k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA016087NCI NIH HHS R01 CA076584NCI NIH HHS R21 CA161108NCI NIH HHS R21 CA202200NCI NIH HHS R37 CA076584NCI NIH HHS T32 CA009161NIGMS NIH HHS R01 GM057587NIGMS NIH HHS R01 GM111852
6 · The paper itself

Abstract

Self-renewing naive mouse embryonic stem cells (mESCs) contain few mitochondria, which increase in number and volume at the onset of differentiation. KBP (encoded by Kif1bp) is an interactor of the mitochondrial-associated kinesin Kif1Bα. We found that TDH, responsible for mitochondrial production of acetyl-CoA in mESCs, and the acetyltransferase GCN5L1 cooperate to acetylate Lys501 in KBP, allowing its recognition by and degradation via Fbxo15, an F-box protein transcriptionally controlled by the pluripotency core factors and repressed following differentiation. Defects in KBP degradation in mESCs result in an unscheduled increase in mitochondrial biogenesis, enhanced respiration and ROS production, and inhibition of cell proliferation. Silencing of Kif1Bα reverts the aberrant increase in mitochondria induced by KBP stabilization. Notably, following differentiation, Kif1bp

Indexed as

Organelle BiogenesisAcetylationAlcohol OxidoreductasesAnimalsCarrier ProteinsCell DifferentiationCell ProliferationCell RespirationCell Self RenewalF-Box ProteinsHEK293 CellsHumansKinesinsLentivirusMiceMitochondriaAlcohol OxidoreductasesBLOC1S1 protein, mouseCarrier ProteinsF-Box ProteinsFbx15 protein, mouseKBP protein, mouseKif1b protein, mouseKinesinsL-threonine 3-dehydrogenaseMitochondrial ProteinsMutant ProteinsNerve Tissue ProteinsRNA, Small Interfering

Identifiers

PMID28319092
PMCPMC5376241
OpenAlexW2602640583

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.