Evidence map›Paper›PMID 28319090›Full record

ArticleNature genetics2017

A single-copy Sleeping Beauty transposon mutagenesis screen identifies new PTEN-cooperating tumor suppressor genes.

Jorge de la Rosa, Julia Weber, Mathias Josef Friedrich, Yilong Li, Lena Rad, Hannes Ponstingl, Qi Liang, Sandra Bernaldo de Quirós, Imran Noorani, Emmanouil Metzakopian and 12 more

Abstract read
In one paragraph

Article in Nature genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  12. Cell genomics · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Jorge de la RosaThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Julia WeberDepartment of Internal Medicine II, Klinikum rechts der Isar, Technische Universität München, München, Germany.
Mathias Josef FriedrichThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Yilong LiThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Lena RadThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Hannes PonstinglThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0001-7573-1703
Qi LiangThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Sandra Bernaldo de QuirósThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Imran NooraniThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Emmanouil MetzakopianThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Alexander StrongThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Meng Amy LiThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Aurora AstudilloServicio de Anatomía Patológica, Hospital Universitario Central de Asturias, Oviedo, Spain.
María Teresa Fernández-GarcíaUnidad de Histopatología Molecular, Facultad de Medicina, IUOPA, Universidad de Oviedo, Oviedo, Spain.
María Soledad Fernández-GarcíaUnidad de Histopatología Molecular, Facultad de Medicina, IUOPA, Universidad de Oviedo, Oviedo, Spain.
Gary J HoffmanThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Rocío FuenteThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
George S VassiliouThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0003-4337-8022
Roland RadThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Carlos López-OtínDepartamento de Bioquímica y Biología Molecular, Facultad de Medicina, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.
Allan BradleyThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Juan CadiñanosThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0001-7561-7759

Funding

Medical Research Council MC_PC_12009Wellcome Trust
6 · The paper itself

Abstract

The overwhelming number of genetic alterations identified through cancer genome sequencing requires complementary approaches to interpret their significance and interactions. Here we developed a novel whole-body insertional mutagenesis screen in mice, which was designed for the discovery of Pten-cooperating tumor suppressors. Toward this aim, we coupled mobilization of a single-copy inactivating Sleeping Beauty transposon to Pten disruption within the same genome. The analysis of 278 transposition-induced prostate, breast and skin tumors detected tissue-specific and shared data sets of known and candidate genes involved in cancer. We validated ZBTB20, CELF2, PARD3, AKAP13 and WAC, which were identified by our screens in multiple cancer types, as new tumor suppressor genes in prostate cancer. We demonstrated their synergy with PTEN in preventing invasion in vitro and confirmed their clinical relevance. Further characterization of Wac in vivo showed obligate haploinsufficiency for this gene (which encodes an autophagy-regulating factor) in a Pten-deficient context. Our study identified complex PTEN-cooperating tumor suppressor networks in different cancer types, with potential clinical implications.

Indexed as

Genes, Tumor SuppressorMutagenesis, InsertionalAnimalsCell LineCell MovementDNA Transposable ElementsEpithelial CellsGene DosageGenetic Predisposition to DiseaseHumansKaplan-Meier EstimateMaleMice, KnockoutMice, TransgenicMutationProstateDNA Transposable ElementsPTEN PhosphohydrolasePten protein, mouse

Identifiers

PMID28319090
PMCPMC5409503

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.