Evidence map›Paper›PMID 28319081›Full record

ArticleNature microbiology2017

Guide-independent DNA cleavage by archaeal Argonaute from Methanocaldococcus jannaschii.

Adrian Zander, Sarah Willkomm, Sapir Ofer, Marleen van Wolferen, Luisa Egert, Sabine Buchmeier, Sarah Stöckl, Philip Tinnefeld, Sabine Schneider, Andreas Klingl and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 148 citations in OpenAlex.

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  14. A Mesophilic Argonaute fromBiomolecules · 2025
    Article
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  20. Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 2 countries.

Adrian ZanderDepartment of Microbiology &Archaea Centre, University of Regensburg, Regensburg 93053, Germany.
Sarah WillkommDepartment of Microbiology &Archaea Centre, University of Regensburg, Regensburg 93053, Germany.
Sapir OferInstitute for Structural and Molecular Biology, Division of Biosciences, University College London, London WC1E 6BT, UK.
Marleen van WolferenMolecular Biology of Archaea, Institute of Biology II, University of Freiburg, Microbiology, Schaenzlestraße 1, 79104 Freiburg, Germany.
Luisa EgertDepartment of Microbiology &Archaea Centre, University of Regensburg, Regensburg 93053, Germany.
Sabine BuchmeierInstitute of Physical and Theoretical Chemistry - NanoBioSciences, Technische Universität Braunschweig-BRICS, Rebenring 56, 38106 Braunschweig, Germany.
Sarah StöcklDepartment of Microbiology &Archaea Centre, University of Regensburg, Regensburg 93053, Germany.
Philip TinnefeldInstitute of Physical and Theoretical Chemistry - NanoBioSciences, Technische Universität Braunschweig-BRICS, Rebenring 56, 38106 Braunschweig, Germany.
Sabine SchneiderCenter for Integrated Protein Science Munich CIPSM, Department of Chemistry, Technische Universität München, Lichtenbergstraße 4, 85748 Garching, Germany.
Andreas KlinglBiocentre of the LMU Munich, Department Biology I - Plant Development, Großhadernerstraße 2-4, 82152 Planegg-Martinstried, Germany.
Sonja-Verena AlbersMolecular Biology of Archaea, Institute of Biology II, University of Freiburg, Microbiology, Schaenzlestraße 1, 79104 Freiburg, Germany.
Finn WernerInstitute for Structural and Molecular Biology, Division of Biosciences, University College London, London WC1E 6BT, UK.
Dina GrohmannDepartment of Microbiology &Archaea Centre, University of Regensburg, Regensburg 93053, Germany.
University of Regensburg · DETechnische Universität Braunschweig · DEUniversity of Freiburg · DECenter for Integrated Protein Science Munich · DEInstitute of Structural and Molecular Biology · GBLudwig-Maximilians-Universität München · DEUniversity College London · GB

Funding

European Research Council 311523Wellcome Trust 207446
6 · The paper itself

Abstract

Prokaryotic Argonaute proteins acquire guide strands derived from invading or mobile genetic elements, via an unknown pathway, to direct guide-dependent cleavage of foreign DNA. Here, we report that Argonaute from the archaeal organism Methanocaldococcus jannaschii (MjAgo) possesses two modes of action: the canonical guide-dependent endonuclease activity and a non-guided DNA endonuclease activity. The latter allows MjAgo to process long double-stranded DNAs, including circular plasmid DNAs and genomic DNAs. Degradation of substrates in a guide-independent fashion primes MjAgo for subsequent rounds of DNA cleavage. Chromatinized genomic DNA is resistant to MjAgo degradation, and recombinant histones protect DNA from cleavage in vitro. Mutational analysis shows that key residues important for guide-dependent target processing are also involved in guide-independent MjAgo function. This is the first characterization of guide-independent cleavage activity for an Argonaute protein potentially serving as a guide biogenesis pathway in a prokaryotic system.

Indexed as

DNA CleavageArchaeal ProteinsArgonaute ProteinsDNADNA, ArchaealDNA, CircularEndonucleasesMethanocaldococcusPlasmidsProtein BindingArchaeal ProteinsArgonaute ProteinsDNADNA, ArchaealDNA, CircularEndonucleases

Identifiers

PMID28319081
PMCPMC7616673
OpenAlexW2601314177

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.