Evidence map›Paper›PMID 28318500›Full record

ArticleAmerican journal of human genetics2017

Mutations in TMEM260 Cause a Pediatric Neurodevelopmental, Cardiac, and Renal Syndrome.

Asaf Ta-Shma, Tahir N Khan, Asaf Vivante, Jason R Willer, Pavle Matak, Chaim Jalas, Ben Pode-Shakked, Yishay Salem, Yair Anikster, Friedhelm Hildebrandt and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. AMolecular syndromology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Loss of the endoplasmic reticulum protein Tmem208 affects cell polarity, development, and viability.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Human Genetics of Truncus Arteriosus.Advances in experimental medicine and biology · 2024
    Review
  12. Review
  13. The SHDRA syndrome-associated geneProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. A novel homozygous variant ofFrontiers in medicine · 2023
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Asaf Ta-ShmaDepartment of Pediatric Cardiology, Hadassah Medical Center, Jerusalem 91120, Israel.
Tahir N KhanCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC 27701, USA.
Asaf VivanteDepartment of Medicine, Boston Children's Hospital and Harvard Medical School, Boston, MA 02115, USA; Talpiot Medical Leadership Program, Sheba Medical Center, Tel-Hashomer, Ramat Gan 52621, Israel.
Jason R WillerCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC 27701, USA.
Pavle MatakCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC 27701, USA.
Chaim JalasBonei Olam, Center for Rare Jewish Genetic Disorders, Brooklyn, NY 11204, USA.
Ben Pode-ShakkedTalpiot Medical Leadership Program, Sheba Medical Center, Tel-Hashomer, Ramat Gan 52621, Israel; Edmond and Lily Safra Children's Hospital, Sheba Medical Center, Tel-Hashomer, Ramat Gan 52621, Israel; Sackler Faculty of Medicine, Tel-Aviv University, Tel-Aviv 6997801, Israel.
Yishay SalemEdmond and Lily Safra Children's Hospital, Sheba Medical Center, Tel-Hashomer, Ramat Gan 52621, Israel; Sackler Faculty of Medicine, Tel-Aviv University, Tel-Aviv 6997801, Israel.
Yair AniksterEdmond and Lily Safra Children's Hospital, Sheba Medical Center, Tel-Hashomer, Ramat Gan 52621, Israel; Sackler Faculty of Medicine, Tel-Aviv University, Tel-Aviv 6997801, Israel.
Friedhelm HildebrandtDepartment of Medicine, Boston Children's Hospital and Harvard Medical School, Boston, MA 02115, USA.
Nicholas KatsanisCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC 27701, USA. Electronic address: katsanis@cellbio.duke.edu.
Orly ElpelegMonique and Jacques Roboh Department of Genetic Research, Hadassah Medical Center, Jerusalem 91120, Israel. Electronic address: elpeleg@hadassah.org.il.
Erica E DavisCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC 27701, USA.
Duke University · USTel Aviv University · ILBoston Children's Hospital · USHadassah Medical Center · ILKingsbrook Jewish Medical Center · US

Funding

Molecular Genetics of BBSR01HD042601 · NICHD · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2003 to 2023
$8.2M
Genetic and Functional Studies of Human Ciliary SyndromesR01DK072301 · NIDDK · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2005 to 2022
$7.2M
Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
Renal Genomics CoreP30DK096493 · NIDDK · DUKE UNIVERSITY · PI WINN, MICHELLE P. · 2012 to 2016
$5.9M
Functional Dissection of CNVs in Neurodevelopmental TraitsR01MH106826 · NIMH · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2015 to 2025
$4.6M
Research Project 3P50DK096415 · NIDDK · DUKE UNIVERSITY · PI KATSANIS, NICHOLAS · 2012 to 2016
$4.2M
The Role of Basa Bodies in Wnt SignalingR01DK075972 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI KATSANIS, NICHOLAS · 2007 to 2015
$3.1M
The Role of Basal Bodies in Wnt SignalingR01GM121317 · NIGMS · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2016 to 2019
$1.7M
NICHD NIH HHS R01 HD042601NIDDK NIH HHS P30 DK096493NIDDK NIH HHS P50 DK096415NIDDK NIH HHS R01 DK068306NIDDK NIH HHS R01 DK072301NIDDK NIH HHS R01 DK075972NIGMS NIH HHS R01 GM121317NIMH NIH HHS R01 MH106826
6 · The paper itself

Abstract

Despite the accelerated discovery of genes associated with syndromic traits, the majority of families affected by such conditions remain undiagnosed. Here, we employed whole-exome sequencing in two unrelated consanguineous kindreds with central nervous system (CNS), cardiac, renal, and digit abnormalities. We identified homozygous truncating mutations in TMEM260, a locus predicted to encode numerous splice isoforms. Systematic expression analyses across tissues and developmental stages validated two such isoforms, which differ in the utilization of an internal exon. The mutations in both families map uniquely to the long isoform, raising the possibility of an isoform-specific disorder. Consistent with this notion, RT-PCR of lymphocyte cell lines from one of the kindreds showed reduced levels of only the long isoform, which could be ameliorated by emetine, suggesting that the mutation induces nonsense-mediated decay. Subsequent in vivo testing supported this hypothesis. First, either transient suppression or CRISPR/Cas9 genome editing of zebrafish tmem260 recapitulated key neurological phenotypes. Second, co-injection of morphants with the long human TMEM260 mRNA rescued CNS pathology, whereas the short isoform was significantly less efficient. Finally, immunocytochemical and biochemical studies showed preferential enrichment of the long TMEM260 isoform to the plasma membrane. Together, our data suggest that there is overall reduced, but not ablated, functionality of TMEM260 and that attenuation of the membrane-associated functions of this protein is a principal driver of pathology. These observations contribute to an appreciation of the roles of splice isoforms in genetic disorders and suggest that dissection of the functions of these transcripts will most likely inform pathomechanism.

Indexed as

Abnormalities, MultipleCardio-Renal SyndromeChild, PreschoolFemaleHumansInfantInfant, NewbornMaleMembrane ProteinsNeurodevelopmental DisordersPedigreePoint MutationProtein IsoformsMembrane ProteinsProtein Isoformstransmembrane protein 260, humanneurodevelopmental syndromesplice isoformswhole-exome sequencing

Identifiers

PMID28318500
PMCPMC5384036
OpenAlexW2596135062

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.