Evidence map›Paper›PMID 28317934›Full record

ArticleScientific reports2017

DEK is required for homologous recombination repair of DNA breaks.

Eric A Smith, Boris Gole, Nicholas A Willis, Rebeca Soria, Linda M Starnes, Eric F Krumpelbeck, Anil G Jegga, Abdullah M Ali, Haihong Guo, Amom R Meetei and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  14. Review
  15. A DEK domain-containing protein GhDEK2D mediatedPlant signaling & behavior · 2022
    Article
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  19. Review
  20. The role of mediator complex subunit 19 in human diseases.Experimental biology and medicine (Maywood, N.J.) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 4 countries.

Eric A SmithDivision of Oncology; Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Boris GoleDepartment of Obstetrics and Gynecology; Ulm University, Ulm, 89075, Germany.
Nicholas A WillisDepartment of Medicine, Division of Hematology-Oncology and Cancer Research Institute, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA, 02215, USA.
Rebeca SoriaChromatin Structure and Function Group, The Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, 2200, Denmark.
Linda M StarnesChromatin Structure and Function Group, The Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, 2200, Denmark.
Eric F KrumpelbeckDivision of Oncology; Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Anil G JeggaDivision of Oncology; Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Abdullah M AliDivision of Experimental Hematology and Cancer Biology; Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Haihong GuoInstitute of Biochemistry and Molecular Biology; Medical School, RWTH Aachen University, Aachen, 52074, Germany.
Amom R MeeteiDivision of Experimental Hematology and Cancer Biology; Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Paul R AndreassenDivision of Experimental Hematology and Cancer Biology; Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Ferdinand KappesInstitute of Biochemistry and Molecular Biology; Medical School, RWTH Aachen University, Aachen, 52074, Germany.
Lisa M Privette VinnedgeDivision of Oncology; Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Jeremy A DanielChromatin Structure and Function Group, The Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, 2200, Denmark.
Ralph ScullyDepartment of Medicine, Division of Hematology-Oncology and Cancer Research Institute, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA, 02215, USA.
Lisa WiesmüllerDepartment of Obstetrics and Gynecology; Ulm University, Ulm, 89075, Germany.
Susanne I WellsDivision of Oncology; Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Cincinnati Children's Hospital Medical Center · USLaboratoire d’immunologie intégrative du cancer · FRUniversity of Copenhagen · DKRWTH Aachen University · DEUniversität Ulm · DEBeth Israel Deaconess Medical Center · USCancer Research Institute · US

Funding

Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI Alexander Miethke · 2007 to 2026
$24.4M
ENVIRONMETAL CARCINOGENESIS AND MUTAGENESIST32ES007250 · NIEHS · UNIVERSITY OF CINCINNATI · PI MILLER, WILLIAM E · 1988 to 2024
$11.9M
ROLE OF ANGPTL4, AN ANGIOGENIC MEDIATOR, IN ARTHRITISP30AR047363 · NIAMS · CINCINNATI CHILDRENS HOSP MED CTR · PI FLICK, MATTHEW J. · 2001 to 2015
$9.2M
Medical Scientist Training ProgramT32GM063483 · NIGMS · UNIVERSITY OF CINCINNATI · PI KHURANA HERSHEY, GURJIT K. · 2002 to 2022
$6.7M
ANALYSIS OF BRCA1 RECOMBINATION FUNCTIONSR01CA095175 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI SCULLY, RALPH · 2002 to 2021
$4.9M
Cincinnati Center for Excellence in Molecular HematologyP30DK090971 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI ZHENG, YI · 2010 to 2015
$4.0M
Role and Regulaton of the Human DEK Proto-OncogeneR01CA116316 · NCI · CINCINNATI CHILDRENS HOSP MED CTR · PI WELLS, SUSANNE I · 2006 to 2016
$2.9M
Papillomavirus Proteins Mediating Cancer and SenescenceR01CA102357 · NCI · CINCINNATI CHILDRENS HOSP MED CTR · PI WELLS, SUSANNE I · 2004 to 2013
$2.6M
NCI NIH HHS R01 CA095175NCI NIH HHS R01 CA102357NCI NIH HHS R01 CA116316NIAMS NIH HHS P30 AR047363NIDDK NIH HHS P30 DK078392NIDDK NIH HHS P30 DK090971NIEHS NIH HHS T32 ES007250NIGMS NIH HHS T32 GM063483
6 · The paper itself

Abstract

DEK is a highly conserved chromatin-bound protein whose upregulation across cancer types correlates with genotoxic therapy resistance. Loss of DEK induces genome instability and sensitizes cells to DNA double strand breaks (DSBs), suggesting defects in DNA repair. While these DEK-deficiency phenotypes were thought to arise from a moderate attenuation of non-homologous end joining (NHEJ) repair, the role of DEK in DNA repair remains incompletely understood. We present new evidence demonstrating the observed decrease in NHEJ is insufficient to impact immunoglobulin class switching in DEK knockout mice. Furthermore, DEK knockout cells were sensitive to apoptosis with NHEJ inhibition. Thus, we hypothesized DEK plays additional roles in homologous recombination (HR). Using episomal and integrated reporters, we demonstrate that HR repair of conventional DSBs is severely compromised in DEK-deficient cells. To define responsible mechanisms, we tested the role of DEK in the HR repair cascade. DEK-deficient cells were impaired for γH2AX phosphorylation and attenuated for RAD51 filament formation. Additionally, DEK formed a complex with RAD51, but not BRCA1, suggesting a potential role regarding RAD51 filament formation, stability, or function. These findings define DEK as an important and multifunctional mediator of HR, and establish a synthetic lethal relationship between DEK loss and NHEJ inhibition.

Indexed as

DNA Breaks, Double-StrandedDNA RepairHomologous RecombinationAnimalsApoptosisChromosomal Proteins, Non-HistoneDNA-Binding ProteinsFemaleHeLa CellsHistonesHumansMaleMice, KnockoutOncogene ProteinsPoly-ADP-Ribose Binding ProteinsProtein BindingChromosomal Proteins, Non-HistoneDEK protein, humanDEK protein, mouseDNA-Binding Proteinsgamma-H2AX protein, mouseHistonesOncogene ProteinsPoly-ADP-Ribose Binding ProteinsProtein Kinase InhibitorsRad51 RecombinaseReplication Protein A

Identifiers

PMID28317934
PMCPMC5357905
OpenAlexW2599491036

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.