Evidence map›Paper›PMID 28317859›Full record

ArticleScientific reports2017

Physiological and transcriptional approaches reveal connection between nitrogen and manganese cycles in Shewanella algae C6G3.

Axel Aigle, Patricia Bonin, Chantal Iobbi-Nivol, Vincent Méjean, Valérie Michotey

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Axel AigleAix-Marseille Université, CNRS, Université de Toulon, IRD, MIO UMR 110, 13288, Marseille, France.
Patricia BoninAix-Marseille Université, CNRS, Université de Toulon, IRD, MIO UMR 110, 13288, Marseille, France.
Chantal Iobbi-NivolAix-Marseille Université, CNRS, BIP Bioénergétique et Ingénierie des Protéines UMR 7281, 13402, Marseille, France.
Vincent MéjeanAix-Marseille Université, CNRS, BIP Bioénergétique et Ingénierie des Protéines UMR 7281, 13402, Marseille, France.
Valérie MichoteyAix-Marseille Université, CNRS, Université de Toulon, IRD, MIO UMR 110, 13288, Marseille, France.
Institut Méditerranéen d’Océanologie · FRAix-Marseille Université · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To explain anaerobic nitrite/nitrate production at the expense of ammonium mediated by manganese oxide (Mn(IV)) in sediment, nitrate and manganese respirations were investigated in a strain (Shewanella algae C6G3) presenting these features. In contrast to S. oneidensis MR-1, a biotic transitory nitrite accumulation at the expense of ammonium was observed in S. algae during anaerobic growth with Mn(IV) under condition of limiting electron acceptor, concomitantly, with a higher electron donor stoichiometry than expected. This low and reproducible transitory accumulation is the result of production and consumption since the strain is able to dissimilative reduce nitrate into ammonium. Nitrite production in Mn(IV) condition is strengthened by comparative expression of the nitrate/nitrite reductase genes (napA, nrfA, nrfA-2), and rates of the nitrate/nitrite reductase activities under Mn(IV), nitrate or fumarate conditions. Compared with S. oneidensis MR-1, S. algae contains additional genes that encode nitrate and nitrite reductases (napA-α and nrfA-2) and an Outer Membrane Cytochrome (OMC)(mtrH). Different patterns of expression of the OMC genes (omcA, mtrF, mtrH and mtrC) were observed depending on the electron acceptor and growth phase. Only gene mtrF-2 (SO1659 homolog) was specifically expressed under the Mn(IV) condition. Nitrate and Mn(IV) respirations seem connected at the physiological and transcriptional levels.

Indexed as

Transcription, GeneticAnaerobiosisCell MembraneCytochromesElectronsGene Expression Regulation, BacterialGenes, BacterialKineticsManganeseNitrate ReductaseNitratesNitrite ReductasesNitritesNitrogenShewanellaCytochromesManganeseNitrate ReductaseNitratesNitrite ReductasesNitritesNitrogen

Identifiers

PMID28317859
PMCPMC5357785
OpenAlexW2604090837

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.