Evidence map›Paper›PMID 28317856›Full record

ArticleScientific reports2017

A smartphone-based diagnostic platform for rapid detection of Zika, chikungunya, and dengue viruses.

Aashish Priye, Sara W Bird, Yooli K Light, Cameron S Ball, Oscar A Negrete, Robert J Meagher

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed, 1 pooled it
34.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 1 synthesis or guideline pooled it, 295 citations in OpenAlex.

  1. A need to raise the bar - A systematic review of temporal trends in diagnostics for Japanese encephalitis virus infection, and perspectives for future research.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2020
    Pooled it
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  11. Saliva-STAT: Sample-to-answer saliva test for COVID-19.Sensors and actuators. B, Chemical · 2024
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58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Aashish PriyeDepartment of Biotechnology and Bioengineering, Sandia National Laboratories, Livermore, CA, 94550, USA.
Sara W BirdDepartment of Biotechnology and Bioengineering, Sandia National Laboratories, Livermore, CA, 94550, USA.
Yooli K LightDepartment of Systems Biology, Sandia National Laboratories, Livermore, CA, 94550, USA.
Cameron S BallDepartment of Biotechnology and Bioengineering, Sandia National Laboratories, Livermore, CA, 94550, USA.
Oscar A NegreteDepartment of Biotechnology and Bioengineering, Sandia National Laboratories, Livermore, CA, 94550, USA.
Robert J MeagherDepartment of Biotechnology and Bioengineering, Sandia National Laboratories, Livermore, CA, 94550, USA.
Sandia National Laboratories California · US

Funding

Field-deployable Assay for Differential Diagnosis of Malaria and Viral Febrile IllnessesR21AI120973 · NIAID · SANDIA CORP-SANDIA NATIONAL LABORATORIES · PI MEAGHER, ROBERT JAMES · 2016 to 2017
$381k
NIAID NIH HHS R21 AI120973
6 · The paper itself

Abstract

Current multiplexed diagnostics for Zika, dengue, and chikungunya viruses are situated outside the intersection of affordability, high performance, and suitability for use at the point-of-care in resource-limited settings. Consequently, insufficient diagnostic capabilities are a key limitation facing current Zika outbreak management strategies. Here we demonstrate highly sensitive and specific detection of Zika, chikungunya, and dengue viruses by coupling reverse-transcription loop-mediated isothermal amplification (RT-LAMP) with our recently developed quenching of unincorporated amplification signal reporters (QUASR) technique. We conduct reactions in a simple, inexpensive and portable "LAMP box" supplemented with a consumer class smartphone. The entire assembly can be powered by a 5 V USB source such as a USB power bank or solar panel. Our smartphone employs a novel algorithm utilizing chromaticity to analyze fluorescence signals, which improves the discrimination of positive/negative signals by 5-fold when compared to detection with traditional RGB intensity sensors or the naked eye. The ability to detect ZIKV directly from crude human sample matrices (blood, urine, and saliva) demonstrates our device's utility for widespread clinical deployment. Together, these advances enable our system to host the key components necessary to expand the use of nucleic acid amplification-based detection assays towards point-of-care settings where they are needed most.

Indexed as

Diagnostic Techniques and ProceduresSmartphoneAnimalsBiological AssayChikungunya virusChlorocebus aethiopsDengue VirusDNA PrimersHumansPolymerase Chain ReactionRNA, ViralSensitivity and SpecificityVero CellsZika VirusDNA PrimersRNA, Viral

Identifiers

PMID28317856
PMCPMC5357913
OpenAlexW2597777251

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.