Evidence map›Paper›PMID 28316461›Full record

ArticleJournal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America2016

Convex Modeling of Interactions with Strong Heredity.

Asad Haris, Daniela Witten, Noah Simon

Abstract read
In one paragraph

Article in Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Regression in tensor product spaces by the method of sieves.Electronic journal of statistics · 2023
    Article
  5. A General Framework for Identifying Hierarchical Interactions and Its Application to Genomics Data.Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America · 2023
    Article
  6. Review
  7. A scalable hierarchical lasso for gene-environment interactions.Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America · 2022
    Article
  8. Bayesian Factor Analysis for Inference on Interactions.Journal of the American Statistical Association · 2021
    Article
  9. Article
  10. A Pliable Lasso.Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. [Generalized interaction LASSO based on alternating direction method of multipliers for liver disease classification].Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi · 2017
    Article
  16. Generalized Hierarchical Sparse Model for Arbitrary-Order Interactive Antigenic Sites Identification in Flu Virus Data.KDD : proceedings. International Conference on Knowledge Discovery & Data Mining · 2016
    Article
  17. Statistical properties of convex clustering.Electronic journal of statistics
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Asad HarisDepartment of Biostatistics, University of Washington.
Daniela WittenDepartments of Statistics and Biostatistics, University of Washington.
Noah SimonDepartment of Biostatistics, University of Washington.

Funding

High-dimensional unsupervised learning, with applications to genomicsDP5OD009145 · OD · UNIVERSITY OF WASHINGTON · PI WITTEN, DANIELA · 2011 to 2015
$1.8M
Data-Driven Statistical Learning with Applications to GenomicsDP5OD019820 · OD · UNIVERSITY OF WASHINGTON · PI SIMON, NOAH · 2014 to 2018
$1.7M
NIH HHS DP5 OD009145NIH HHS DP5 OD019820
6 · The paper itself

Abstract

We consider the task of fitting a regression model involving interactions among a potentially large set of covariates, in which we wish to enforce strong heredity. We propose FAMILY, a very general framework for this task. Our proposal is a generalization of several existing methods, such as VANISH [Radchenko and James, 2010], hierNet [Bien et al., 2013], the all-pairs lasso, and the lasso using only main effects. It can be formulated as the solution to a convex optimization problem, which we solve using an efficient alternating directions method of multipliers (ADMM) algorithm. This algorithm has guaranteed convergence to the global optimum, can be easily specialized to any convex penalty function of interest, and allows for a straightforward extension to the setting of generalized linear models. We derive an unbiased estimator of the degrees of freedom of FAMILY, and explore its performance in a simulation study and on an HIV sequence data set.

Identifiers

PMID28316461
PMCPMC5353363

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.